PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G407700.1.p
Common NameLOC101778423, SETIT_001651mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 410aa    MW: 43854 Da    PI: 9.1316
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G407700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.28.4e-50431682128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                         +pGfrFhPt+eel+ +yL++kvegk+++l e i+ +d+y+++Pw+Lp++++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ +
  Seita.5G407700.1.p  43 MPGFRFHPTEEELIEFYLRRKVEGKRFNL-ELITFLDLYRYDPWELPAMASIGEKEWFFYVPRDRKYRNGDRPNRVTASGYWKATGADRMI 132
                         79**************************9.89***************888889************************************** PP

                 NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++++ +glkktLvfy+g+apkg++++W+m+eyrl
  Seita.5G407700.1.p 133 RAENNRPIGLKKTLVFYSGKAPKGVRSSWIMNEYRL 168
                         **********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100555.42642189IPR003441NAC domain
SuperFamilySSF1019417.59E-5642188IPR003441NAC domain
PfamPF023651.4E-2444168IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MSGRHENGHG AAATAAAAAA AVGGGGRAGE GGGGDAHEDD LVMPGFRFHP TEEELIEFYL  60
RRKVEGKRFN LELITFLDLY RYDPWELPAM ASIGEKEWFF YVPRDRKYRN GDRPNRVTAS  120
GYWKATGADR MIRAENNRPI GLKKTLVFYS GKAPKGVRSS WIMNEYRLPP DHTDRYQKTE  180
ISLCRVYKRT GIDDGHGHPS ARSTPSRRAT AQQDIKQASS SSTPTPPTSP PKMMQLLHGE  240
CTSAPTIRDH AAAHNDNKPP PPAAAQRQLP TKPCNGGYLL STASSAAGAS DHLQVGAAAT  300
PPSSYDQSRN ANAFASTYSL LSLVNAASMG GGSAAAAIDE LSSLVGHGPP AYFNHQAGGS  360
FLPLPTPSSS QPMALGTLPM SLAAISDKIW DWNTIPDAAA RDYSSAGFK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-544418919165NO APICAL MERISTEM PROTEIN
1ut4_B3e-544418919165NO APICAL MERISTEM PROTEIN
1ut7_A3e-544418919165NO APICAL MERISTEM PROTEIN
1ut7_B3e-544418919165NO APICAL MERISTEM PROTEIN
4dul_A3e-544418919165NAC domain-containing protein 19
4dul_B3e-544418919165NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12432GGRAGEGGG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G407700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0398640.0BT039864.1 Zea mays full-length cDNA clone ZM_BFc0047I12 mRNA, complete cds.
GenBankEU9571310.0EU957131.1 Zea mays clone 1583712 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970843.10.0NAC domain-containing protein 35
TrEMBLK3XIC90.0K3XIC9_SETIT; Uncharacterized protein
STRINGSi001651m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28263787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.11e-101NAC domain containing protein 35