PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.5G391200.1.p

Common Name

LOC101780159, SETIT_002586mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

NAC

Protein Properties

Length: 264aa MW: 28428.4 Da PI: 5.6756

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.5G391200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	138.4	4.4e-43	7	140	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvka...eekewyfFskrdkkyatgkrknratksgyWk 84 ppG+rF Pt+eel+++yL++k+++ + ++e+vi+ vd+y+++P +Lp + + e + w+fF++r++++a+g r++r+t sgyWk Seita.5G391200.1.p 7 PPGYRFYPTEEELICFYLRNKLDSLRDDIERVIPVVDVYSADPGQLPGihamlR--GgagEGEPWFFFCPRQEREARGGRPSRTTPSGYWK 95 8**************************99************4456551..13336679*********************** PP NAM 85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 a g+ v+s+ +++++g+kkt+vfy+grap+g+kt+W m+eyr+ Seita.5G391200.1.p 96 AAGTPGVVYSSaGRRAIGMKKTMVFYRGRAPSGTKTNWKMNEYRA 140 *****9977888*************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-48	3	147	IPR003441	NAC domain
PROSITE profile	PS51005	47.161	6	186	IPR003441	NAC domain
Pfam	PF02365	4.4E-25	7	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MAAAGHPPGY RFYPTEEELI CFYLRNKLDS LRDDIERVIP VVDVYSADPG QLPGIHAMLR 60 GGAGEGEPWF FFCPRQEREA RGGRPSRTTP SGYWKAAGTP GVVYSSAGRR AIGMKKTMVF 120 YRGRAPSGTK TNWKMNEYRA LQYYDDAAGG PTDGSSSSTH THAAAPPNVP PPQLRSEFSL 180 CRLYTQSGTL RQFDRRPLGG AGAGAPSEEP GPSTAAAASP PDDDDGSGSS TQQQQLQLAE 240 RGDHDPYGDD VAILDALLYW PGD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-32	1	142	12	144	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-32	1	142	12	144	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-32	1	142	12	144	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-32	1	142	12	144	NO APICAL MERISTEM PROTEIN
4dul_A	9e-32	1	142	12	144	NAC domain-containing protein 19
4dul_B	9e-32	1	142	12	144	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.5G391200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK071274	1e-133	AK071274.1 Oryza sativa Japonica Group cDNA clone:J023087C18, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004970673.1	0.0	NAC domain-containing protein 90
Swissprot	Q9FMR3	3e-62	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	K3XL13	0.0	K3XL13_SETIT; Uncharacterized protein
STRING	Si002586m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	5e-62	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	Seita.5G391200.1.p
Entrez Gene	101780159

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]