PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.5G378000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | WRKY | ||||||||
Protein Properties | Length: 347aa MW: 36377.3 Da PI: 6.0992 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100 | 1.4e-31 | 155 | 211 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 +Dgy+WrKYGqK++k++++prsYY+Cts++C +kk+ve+s++dp+++++tYeg H h Seita.5G378000.1.p 155 SDGYKWRKYGQKSIKNNPHPRSYYKCTSSRCGAKKHVEKSTDDPEMLIVTYEGPHLH 211 7******************************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.4E-30 | 151 | 212 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-26 | 152 | 213 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-35 | 154 | 213 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.829 | 155 | 214 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.5E-26 | 156 | 211 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MGDVLHPQAG PGDVAPLWPG EIDEQLITEL LSDESLLLGA LQQAPAGGDA EPCSRDNTGA 60 SSSPAAPAPC NSGGGGAERE EVLPQPEAVS RALCSVYTGP TIRDIEKALS TSRPYPWSSR 120 RYSTMHLGRF GAASRAAPES KYTTKVRSCG GKTPSDGYKW RKYGQKSIKN NPHPRSYYKC 180 TSSRCGAKKH VEKSTDDPEM LIVTYEGPHL HGPQPLFPRR QLASVDLSGA AAAAAKKQAR 240 TPSPAARASD DGGAWPPNDQ QMACDDDDAG ARGGRAATLP GSGRAEDAVP HGQQHLADSC 300 DDGSTASVPA PPPRAATALT CDSPPTTWSC PDFPFVWSPE ADPLLL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 7e-21 | 156 | 211 | 19 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 7e-21 | 156 | 211 | 19 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.5G378000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004970545.1 | 0.0 | WRKY transcription factor WRKY24 isoform X1 | ||||
TrEMBL | A0A368RD25 | 0.0 | A0A368RD25_SETIT; Uncharacterized protein | ||||
STRING | Sb03g039550.1 | 1e-138 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13144 | 26 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43290.1 | 9e-28 | WRKY DNA-binding protein 49 |
Link Out ? help Back to Top | |
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Phytozome | Seita.5G378000.1.p |