PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.5G377500.1.p | ||||||||
Common Name | SETIT_000234mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | GRAS | ||||||||
Protein Properties | Length: 816aa MW: 89607.6 Da PI: 6.1697 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 396.6 | 2.6e-121 | 439 | 808 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 ++lL++cA+ v+++d + a++lL++++++asp+gd qRla +f+++L+arla+++s++yk++ +++ + +++l+a++l+ ++P+ k Seita.5G377500.1.p 439 ETLLIHCAQSVATDDRRGATELLKQIRQHASPKGDGDQRLAYCFANGLEARLAGNGSQIYKSVIMTRFP---CTDVLKAYQLYLAACPFKK 526 789*************************************************************99999...9****************** PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181 +sh+ aNq+I++ave++++vHi+D++i +G+QWp+L+q L++Rp+gpp+lRiTg++ p++g +e++eetg+ L+++A++++vpfef++ Seita.5G377500.1.p 527 ISHFFANQTIMNAVEKAKKVHIVDYGIYYGFQWPCLIQRLSTRPGGPPRLRITGIDTPQPGfrPAERIEETGRYLKDYAQTFNVPFEFKA- 616 ******************************************************************************************. PP GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272 +a+r+e++++e+L+++++E l+Vn++++ ++l+desv es+r+ vL+++++++P+++++ + ++n++ F+ rf eal +ysa+fd+le Seita.5G377500.1.p 617 IASRFEAVQIEDLQIEKDELLIVNCMFKFKTLMDESVVAESPRNMVLNTIRKMNPHLFIHGIINGSYNAPFFVSRFREALFHYSAVFDMLE 707 7****************************************************************************************** PP GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363 +++pr++e+r +E +l+gre+ nv++ceg er er et+++W+ r ++aGFk++p++++++k a+ +r +++d + ++e++++l++gWk Seita.5G377500.1.p 708 TNIPRDNEQRLLIESALFGREAINVISCEGMERMERPETYKQWQVRNQRAGFKQLPMNQDIMKRAREKVRCYHKD-FIIDEDNKWLLQGWK 797 *************************************************************************77.*************** PP GRAS 364 drpLvsvSaWr 374 +r L+++S W+ Seita.5G377500.1.p 798 GRILMALSTWK 808 **********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 69.238 | 412 | 789 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.8E-119 | 439 | 808 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 816 aa Download sequence Send to blast |
MVMDTGLHEL CALLPGSKRD GHLPIYPQIA AAAANGFTAE DLESLLFLPH DGIAAAAGVG 60 GGYLNVAPTT VVPPASTNRA SPPRDAAAAP APAAAGQPDD SEAFSDIVLG YINRMLMAED 120 IDDKFEHYPE HSALLAAEKP FLEILADQPT SSGGSAVESP DGSSVTNSCN SFGSCSCGAA 180 ASDGFGAVPT PALDFPSAAF LQPPQLYQDL SPESSVVDAG GPWPYDPTEF YQLQTNPVPE 240 ALLSQSPSFA SSNGSGVALS DGFGSLLSSS GVMPDVGLTD FVVQSQQAMQ FCRGLEEASR 300 FLPDESKLVI DLEKPASVTG LVANVKEEKR FAEVKTEKAD VEAAIHRGKK HFYGDDLDAE 360 EGRCSKHSAS AIDTDHLVRE MMDKVLLCNG ETCSKGVKEL REALQHDVAR HSHGGHGKGS 420 GHGKGRGKKQ PKKEVVDLET LLIHCAQSVA TDDRRGATEL LKQIRQHASP KGDGDQRLAY 480 CFANGLEARL AGNGSQIYKS VIMTRFPCTD VLKAYQLYLA ACPFKKISHF FANQTIMNAV 540 EKAKKVHIVD YGIYYGFQWP CLIQRLSTRP GGPPRLRITG IDTPQPGFRP AERIEETGRY 600 LKDYAQTFNV PFEFKAIASR FEAVQIEDLQ IEKDELLIVN CMFKFKTLMD ESVVAESPRN 660 MVLNTIRKMN PHLFIHGIIN GSYNAPFFVS RFREALFHYS AVFDMLETNI PRDNEQRLLI 720 ESALFGREAI NVISCEGMER MERPETYKQW QVRNQRAGFK QLPMNQDIMK RAREKVRCYH 780 KDFIIDEDNK WLLQGWKGRI LMALSTWKPD HKSSH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 3e-55 | 442 | 808 | 8 | 375 | GRAS family transcription factor containing protein, expressed |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.5G377500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004970541.1 | 0.0 | scarecrow-like protein 9 | ||||
Swissprot | O80933 | 0.0 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | A0A368RD42 | 0.0 | A0A368RD42_SETIT; Uncharacterized protein | ||||
STRING | Si000234m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12518 | 31 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.5G377500.1.p |