PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.5G364600.1.p | ||||||||
Common Name | SETIT_004575mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | LBD | ||||||||
Protein Properties | Length: 246aa MW: 25789.1 Da PI: 6.713 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129.5 | 1.5e-40 | 57 | 156 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrr+Ca++C++apyf ++p+kfa+vhk+FGasnv+k+l ++ e er da+sslvyeA+ r+rdPvyG++g i+ lqqq++ l+ Seita.5G364600.1.p 57 PCAACKLLRRRCAQECPFAPYFSPHEPHKFAAVHKVFGASNVSKMLLEVAEGERADAASSLVYEANLRLRDPVYGCMGAISVLQQQVNALE 147 7****************************************************************************************** PP DUF260 92 aelallkee 100 ael+++++e Seita.5G364600.1.p 148 AELEAVRAE 156 ****99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.057 | 56 | 157 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.9E-40 | 57 | 154 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016020 | Cellular Component | membrane |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MSTERERLDE IGKKIKREPD TATLALAAAS ASTAPADSRV PRRVGLGLGG ALNTVTPCAA 60 CKLLRRRCAQ ECPFAPYFSP HEPHKFAAVH KVFGASNVSK MLLEVAEGER ADAASSLVYE 120 ANLRLRDPVY GCMGAISVLQ QQVNALEAEL EAVRAEILKH RYQQAGAAGA SLVDDDTHAT 180 GSFVAPAPAP VHARDVVSVV ETAGQGVAAT APGMSAVYVA EAEQRPSSNH YGALNNPSEH 240 AAYFG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-42 | 57 | 172 | 11 | 126 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-42 | 57 | 172 | 11 | 126 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00283 | DAP | Transfer from AT2G30340 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.5G364600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT068699 | 1e-170 | BT068699.1 Zea mays full-length cDNA clone ZM_BFb0375M24 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004970407.1 | 1e-179 | LOB domain-containing protein 15 | ||||
Swissprot | Q9AT61 | 4e-71 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | A0A368RCJ5 | 1e-177 | A0A368RCJ5_SETIT; Uncharacterized protein | ||||
STRING | Si004575m | 1e-175 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2630 | 38 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 4e-64 | LOB domain-containing protein 15 |
Link Out ? help Back to Top | |
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Phytozome | Seita.5G364600.1.p |
Publications ? help Back to Top | |||
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