PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G336800.1.p
Common NameLOC101781517, SETIT_002320mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 313aa    MW: 33636.9 Da    PI: 8.4973
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G336800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.95.5e-11125173455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h +rEr RR+r+ ++f+ L  llP+     s K sK +i+  A  YI +L+
  Seita.5G336800.1.p 125 RHIMRERLRRERVSQGFADLHALLPPG---ASSKGSKNDIVGAAAGYIWELE 173
                         599***********************7...6*****************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.9E-9115173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.24E-9119173No hitNo description
PROSITE profilePS5088813.103121172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-14121195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-7125172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-7127178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MADPFFYFGQ DDADFGEDYL MSLGLILPPP AAALPMPGSA FEAYQRQRAP ALLESPMGRG  60
HQHSNSGAGS GANVNVHRRM FDYLRRIVHH DAAAAGTAVH PAPGNEEAAT VPSSTPQAPR  120
SSRFRHIMRE RLRRERVSQG FADLHALLPP GASSKGSKND IVGAAAGYIW ELEGRKGWLR  180
ARNQELMLER AASSRWRGGG ARNAGGGGGN DMVVKVRAES GDHATAVDVF EAVLRRLKAM  240
EELRVTAIRS CFCAGGMWMD VGVESHQVST REVDKAITNA LMELSGNELG KQDPSSSKPR  300
FSCQVESGVP MG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130135RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G336800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9488634e-61EU948863.1 Zea mays clone 388069 mRNA sequence.
GenBankKJ7280304e-61KJ728030.1 Zea mays clone pUT6169 bHLH transcription factor (bHLH79) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012701619.10.0transcription factor BHLH148
TrEMBLK3XK970.0K3XK97_SETIT; Uncharacterized protein
STRINGSi002320m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127302432