PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.5G334600.1.p | ||||||||
Common Name | LOC101769505, SETIT_004290mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | LBD | ||||||||
Protein Properties | Length: 231aa MW: 23567.9 Da PI: 8.5034 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 118.6 | 3.7e-37 | 43 | 151 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.........paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilk 82 +C aCk+lrr+C+++Cv+ap+f + + +++fa+vhk+FGasnv k+l+++p r+da+ss++yeA+ar+ dPvyG+vg+il+ Seita.5G334600.1.p 43 PCGACKFLRRRCVPGCVFAPHFgggsvrehgAGAGAAQFAAVHKVFGASNVAKMLSRVPVALRRDAASSVCYEAQARIADPVYGCVGTILA 133 7*********************99998877444557******************************************************* PP DUF260 83 lqqqleqlkaelallkee 100 lq+q++ ++ael+++++e Seita.5G334600.1.p 134 LQHQVALVQAELSMAQTE 151 *************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.12 | 42 | 152 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.6E-41 | 43 | 149 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MSRAMQPPGK RAGAAPAAAA GPAHAQAQAQ AEEAPPGGAA GAPCGACKFL RRRCVPGCVF 60 APHFGGGSVR EHGAGAGAAQ FAAVHKVFGA SNVAKMLSRV PVALRRDAAS SVCYEAQARI 120 ADPVYGCVGT ILALQHQVAL VQAELSMAQT ELLNRRLALA TVNPAYSAAS PTSQMVNCGS 180 LSQAVDFIDI EPAMRGLPPP LVPSQQQPQR EDQDGGSPTI DVFSHNVLGK * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-39 | 34 | 153 | 2 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-39 | 34 | 153 | 2 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.5G334600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004970122.1 | 1e-164 | LOB domain-containing protein 4 | ||||
Swissprot | Q9SRV3 | 2e-49 | LBD20_ARATH; LOB domain-containing protein 20 | ||||
TrEMBL | K3XQV3 | 1e-163 | K3XQV3_SETIT; Uncharacterized protein | ||||
STRING | Si004290m | 1e-164 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14085 | 25 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 5e-42 | LOB domain-containing protein 20 |
Link Out ? help Back to Top | |
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Phytozome | Seita.5G334600.1.p |
Entrez Gene | 101769505 |