PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G326500.1.p
Common NameLOC101772719, SETIT_000730mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family CPP
Protein Properties Length: 610aa    MW: 66132.8 Da    PI: 8.8273
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G326500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR39.98.6e-13156195242
                 TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                         +kk CnC++s+Clk+YCeCfa+g++C+  C+C++C+N++e+
  Seita.5G326500.1.p 156 KKKCCNCRNSRCLKLYCECFASGAHCDG-CNCTNCFNNSEN 195
                         799*************************.********9985 PP
2TCR50.73.6e-16239278140
                 TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                         k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Seita.5G326500.1.p 239 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 278
                         589***********************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011145.3E-13155195IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.243156279IPR005172CRC domain
PfamPF036387.6E-9157192IPR005172CRC domain
SMARTSM011147.9E-20239280IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.2E-12242277IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MAGREQGGGG PPQRPPVPAA STQPPIKKLV RQLDFNSAAL AGNPAMAAAA AAVSRALQPR  60
SLPVGLQQPP QHARAAVPMG VPQQLHPRLL PVMRPHHVVG HVPLPRHAVP VAVPVPQLRP  120
VPPQPVQRPP VAVPLKPESP KPRPRLYEGK DATPTKKKCC NCRNSRCLKL YCECFASGAH  180
CDGCNCTNCF NNSENEAARR EAIDATLERN PDAFRPKIGS SPHANRNNEV SSDLPLIGKH  240
NKGCHCKKSG CLKKYCECFQ ANILCSENCK CMDCKNFEAS DERRALFQGD HKNSINMQQV  300
TNAAVNGAIG ATGFPSPSTS RKRKHIDPSL DHSNKEHVAQ RNSHLPQKNA VPDGSIPISQ  360
SAHPPTLGPF KVSYRPLLAD IVQTEDIKDL CKLLVVVSGE AAKAYAGRKT QEERVPEKED  420
ERGGQKEDEK AGSLGSTNHD REGNNQDPDH KASIDDHSSR GTHTGKAVLE ESRPNCTDDH  480
KSNRPMSPGT LALMCDEQDT MFTTSQNAIA QQTVAVNQNQ SELYAEQERV VLTEFRDCLR  540
KLVTFGRMKE ERYSMAIKSE TSGHPGQVNG VSRVPYPKVD APAVVKTSLQ GSSSHPVAGK  600
PVTGHLDKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-2916028814132Protein lin-54 homolog
5fd3_B4e-2916028814132Protein lin-54 homolog
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G326500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0672400.0BT067240.1 Zea mays full-length cDNA clone ZM_BFb0345D13 mRNA, complete cds.
GenBankHQ8586710.0HQ858671.1 Zea mays clone UT1107 CPP transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970041.10.0protein tesmin/TSO1-like CXC 5 isoform X1
TrEMBLK3XFR10.0K3XFR1_SETIT; Uncharacterized protein
STRINGSi000730m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47303657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-122Tesmin/TSO1-like CXC domain-containing protein