PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G322500.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family TCP
Protein Properties Length: 406aa    MW: 42925.2 Da    PI: 6.8021
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G322500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.61.1e-34102216189
                 TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.ssssasec.....eaesssssasns 85 
                         aag+kdrhsk++T++g+RdRRvRl a++a+rf+d+qd+LG+d++sk+++WL+++ak ai+el++  ++++a e+     e+++++ s+s  
  Seita.5G322500.1.p 102 AAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLIRNAKNAIDELPDRaEAPPAAEAadaaaEPAEQVTSTS-- 190
                         689*************************************************************9633333333222223333333333.. PP

                 TCP  86 ssg........................k 89 
                                                    +
  Seita.5G322500.1.p 191 --YgfgnpggaiggvsagsfvphsvgaD 216
                         ..02334445555665555555555542 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-31104214IPR005333Transcription factor, TCP
PROSITE profilePS5136932.723105163IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MASRLKLEED KNQLSKGLDP WGNNPTATTS TLHYLLQEKE RAQAQEQLQI YHQQGFSYLQ  60
HHRRQQQSRA AGAGGDGVSS GESTPVDALA TAFGSGRIVR SAAGRKDRHS KVCTARGLRD  120
RRVRLAAHTA IRFYDVQDRL GYDRPSKAVD WLIRNAKNAI DELPDRAEAP PAAEAADAAA  180
EPAEQVTSTS YGFGNPGGAI GGVSAGSFVP HSVGADGVSG NVKSLFPSSS TASTTPAHDE  240
YRGSPPDLLS RTTSSQPQEL CLTLQSNQHQ IFSHQGMISG AGVPGWPEHG QRMPPWHASE  300
SGAGDGRGAG NGDGYMFGAQ PRQGLEHQSQ LFSQGEPLQS SGGWASSART WLDPLAAIHQ  360
PAAMAGQIGF SHLVGAGGGF MGFLAPAAAQ RLQSEEEQGS EAMRE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-20110164155Putative transcription factor PCF6
5zkt_B2e-20110164155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G322500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9721190.0EU972119.1 Zea mays clone 375445 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972181.10.0transcription factor PCF7
SwissprotQ8LT051e-163PCF7_ORYSJ; Transcription factor PCF7
TrEMBLA0A368RB940.0A0A368RB94_SETIT; Uncharacterized protein
STRINGPavir.Eb03208.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120562330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.34e-38TCP family protein