PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.5G321300.2.p | ||||||||
Common Name | LOC101782847, SETIT_000545mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ARF | ||||||||
Protein Properties | Length: 683aa MW: 74565.1 Da PI: 7.2359 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.8 | 1.1e-24 | 128 | 229 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+lt sd++++g +++p++ ae++ ++ + s++l+ +d++g +W++++iyr++++r++lt+GW++Fv+ ++L +gD v+F Seita.5G321300.2.p 128 FCKTLTASDTSTHGGFSVPRRAAEDCfppldynQLRP--SQELVAKDLHGAKWKFRHIYRGQPRRHLLTTGWSSFVHKKKLVSGDAVLFL- 215 99****************************9876665..459************************************************. PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 + +++el+++v+r+ Seita.5G321300.2.p 216 -RGDDGELRLGVRRA 229 .3489999***9986 PP | |||||||
2 | Auxin_resp | 91.6 | 1.4e-30 | 256 | 334 | 3 | 82 |
Auxin_resp 3 haastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 ++++++svF++ YnPra++se++++++k+ k+l+++v++G R+ ++ +ed+serr sG+vvg+s++d+v+Wp+SkWrsL Seita.5G321300.2.p 256 DSLEHRSVFHISYNPRATASEYIIPYRKFIKSLNRPVCIGARINFQCHNEDVSERR-SGMVVGISEVDSVKWPGSKWRSL 334 57899***************************************************.9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 8.5E-45 | 112 | 266 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.0E-38 | 123 | 229 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.34E-23 | 126 | 228 | No hit | No description |
SMART | SM01019 | 3.2E-24 | 128 | 230 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.324 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-22 | 128 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.2E-25 | 257 | 334 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 683 aa Download sequence Send to blast |
MGIDLNMVDV GGEDRRPPLG VCRELWHACA GPVVSLPRRG SLVVYLPQGH LAAAGGGDVT 60 ADLPPHVVCR VADVELCADA ATDEVYARLA LVAEGEAFGR NVRGAGVEGD DDMEDLDAER 120 KSRMLHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLDYN QLRPSQELVA KDLHGAKWKF 180 RHIYRGQPRR HLLTTGWSSF VHKKKLVSGD AVLFLRGDDG ELRLGVRRAI QLKNEALFED 240 FSSDSAKRHT LSDVYDSLEH RSVFHISYNP RATASEYIIP YRKFIKSLNR PVCIGARINF 300 QCHNEDVSER RSGMVVGISE VDSVKWPGSK WRSLLVRWED GSECNGQDRV SPWEIEIVGG 360 SVSVAHSLSA SSSKRTKLCP QGNLDVPTMW NGCTDSVETG KLPRVLQGQE LMGFRTHRVT 420 CAPQTAEVAK FQSSDASRFL TNARSCMLSG PTSRLAVQNT SFTYQSVGFN ESIGFSEVLQ 480 GQEISQAVPM FQGMMSEACS VKGGYGLRGY MRTPTTVDGL SATAQECSLT LSTPPAAQVH 540 SPHPNHMFNQ TVASQLGLAS KTAGEVGNSS QPRPFEMLWE AQTRSQHGRP GQISLDQFET 600 RRASAPGDAA KTGSGGREVR KTSCRLFGFS LTEKILPADD DSVKEVSYEA ECQNPRMLDL 660 FGYNRSTPNA ALPALCAAPF GM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 2e-95 | 20 | 356 | 18 | 353 | Auxin response factor 1 |
4ldy_B | 2e-95 | 20 | 356 | 18 | 353 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.5G321300.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004969978.1 | 0.0 | auxin response factor 3 isoform X2 | ||||
Swissprot | Q5JMM1 | 0.0 | ARFC_ORYSJ; Auxin response factor 3 | ||||
TrEMBL | K3XF86 | 0.0 | K3XF86_SETIT; Auxin response factor | ||||
STRING | Si000542m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33860.1 | 1e-150 | ARF family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.5G321300.2.p |
Entrez Gene | 101782847 |
Publications ? help Back to Top | |||
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