PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.5G318300.1.p | ||||||||
Common Name | LOC101771901, SETIT_001439mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | HSF | ||||||||
Protein Properties | Length: 449aa MW: 49923 Da PI: 5.0865 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 109.3 | 2.8e-34 | 14 | 104 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 Fl+k+ye+++d++++ ++ w+ g+sfvv ++ ef +++LpkyFkh+nf+SFvRQLn+YgF+kv+ e+ weF+++ F +g+++ Seita.5G318300.1.p 14 FLSKTYEMVDDPATDAVVAWTPPGTSFVVANQAEFCRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPEQ---------WEFANEDFIRGQRH 95 9***************************************************************9998.........************** PP XXXXXXXXX CS HSF_DNA-bind 93 llekikrkk 101 l++i+r+k Seita.5G318300.1.p 96 RLKNIHRRK 104 *******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 3.67E-34 | 9 | 103 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 3.8E-61 | 10 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 3.0E-37 | 11 | 103 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 7.6E-31 | 14 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.4E-20 | 14 | 37 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.4E-20 | 52 | 64 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 53 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.4E-20 | 65 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000302 | Biological Process | response to reactive oxygen species | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 449 aa Download sequence Send to blast |
MEAGGGSASS LPPFLSKTYE MVDDPATDAV VAWTPPGTSF VVANQAEFCR DLLPKYFKHN 60 NFSSFVRQLN TYGFRKVDPE QWEFANEDFI RGQRHRLKNI HRRKPIFSHS SHPQGSGPLA 120 DNERREYEDE IEKLKRDNDA LTLELEKNAQ KKIDMERRMQ ELEDKLIYLE DRQKNLIAYV 180 RDIVQAPGFR SSFVQQPDHH GKKRRLPVPI SLHQDANAEG NQIVHGGLTN PPVCIESFDK 240 MESSLNSLEN FFREASEAFD ISYDGVPGPS SAVVITELHS SGESDPHVPS PPSRMHTSSA 300 GAGDSPSRMH TSSAGAGDSL SSHDVTESTS CAESPPLPQM MSFTDSRAKV SEIDVNLEPA 360 ITETGPSRDQ AAEDSPHPAP GANDGFWEQF LTEQPGSNTH QEAQSERRDG DNKGDQVRIG 420 DRENLWWGKK NVEQMTEKLG HLTSAEKT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 4e-28 | 4 | 103 | 19 | 129 | Heat shock factor protein 1 |
5d5v_B | 4e-28 | 4 | 103 | 19 | 129 | Heat shock factor protein 1 |
5d5v_D | 4e-28 | 4 | 103 | 19 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00443 | DAP | Transfer from AT4G18880 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.5G318300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU492460 | 0.0 | EU492460.1 Pennisetum glaucum heat shock transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004969950.1 | 0.0 | heat stress transcription factor A-4b | ||||
Swissprot | Q94J16 | 0.0 | HFA4B_ORYSJ; Heat stress transcription factor A-4b | ||||
TrEMBL | K3XHR7 | 0.0 | K3XHR7_SETIT; Uncharacterized protein | ||||
STRING | Si001439m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3296 | 37 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18880.1 | 2e-79 | heat shock transcription factor A4A |
Link Out ? help Back to Top | |
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Phytozome | Seita.5G318300.1.p |
Entrez Gene | 101771901 |
Publications ? help Back to Top | |||
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