PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.5G307400.1.p | ||||||||
Common Name | LOC101767343, SETIT_002580mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | HSF | ||||||||
Protein Properties | Length: 266aa MW: 28686.8 Da PI: 9.7143 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 103 | 2.6e-32 | 37 | 129 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 F+ k++++++d++++ +++w +n+f+vld+ f++ +Lp+yFkh+nfaSFvRQLn+YgF+kv++++ weF+h+sF +g+ + Seita.5G307400.1.p 37 FVAKTFHMVSDSATDAVVRWGGASNTFLVLDPAAFSDYLLPSYFKHRNFASFVRQLNTYGFRKVDTDR---------WEFAHESFLRGQAH 118 9********************999******************************************99.........************** PP XXXXXXXXXXX CS HSF_DNA-bind 93 llekikrkkse 103 ll i rkk++ Seita.5G307400.1.p 119 LLPLIVRKKKK 129 ********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.0E-34 | 28 | 120 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 5.5E-47 | 33 | 126 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 6.67E-31 | 34 | 126 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 2.7E-16 | 37 | 60 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 7.3E-28 | 37 | 126 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.7E-16 | 75 | 87 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 76 | 100 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.7E-16 | 88 | 100 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MGSECKEHLQ LHAGFGAGGG GLSPPQQQLQ AGAIAPFVAK TFHMVSDSAT DAVVRWGGAS 60 NTFLVLDPAA FSDYLLPSYF KHRNFASFVR QLNTYGFRKV DTDRWEFAHE SFLRGQAHLL 120 PLIVRKKKKA GGGGRELCEE GEEVRGTIRD VRRLREEQRG MEEELQAMDR RLRAAESRPG 180 QMMAFLAKLA DDPGVVLRAM LAKKEELAAG KGLPPTPLPV EAPGKRRRIG GAEAAGGAGE 240 AAAAELAQGR GAVPFPFSVL GQVFY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-23 | 34 | 126 | 26 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-23 | 34 | 126 | 26 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-23 | 34 | 126 | 26 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 224 | 228 | KRRRI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00379 | DAP | Transfer from AT3G24520 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.5G307400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU954042 | 0.0 | EU954042.1 Zea mays clone 1452946 heat shock factor protein HSF30 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004969854.1 | 0.0 | heat stress transcription factor C-1b | ||||
Swissprot | Q942D6 | 1e-130 | HFC1B_ORYSJ; Heat stress transcription factor C-1b | ||||
TrEMBL | K3XL07 | 0.0 | K3XL07_SETIT; Uncharacterized protein | ||||
STRING | Si002580m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11298 | 31 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24520.1 | 7e-60 | heat shock transcription factor C1 |
Link Out ? help Back to Top | |
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Phytozome | Seita.5G307400.1.p |
Entrez Gene | 101767343 |
Publications ? help Back to Top | |||
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