PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G306000.1.p
Common NameLOC101760846, SETIT_002365mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 306aa    MW: 31610.8 Da    PI: 4.8528
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G306000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.56.4e-2985143259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          D ++WrKYGqK++kgs+fpr+YYrC+s+ gCp++k+ver++  p++v++tY+ eHnh+
  Seita.5G306000.1.p  85 TDSWAWRKYGQKPIKGSPFPRAYYRCSSNkGCPARKQVERDRAKPDTVIVTYSFEHNHS 143
                         69**************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081129.2379145IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.9E-2981143IPR003657WRKY domain
SuperFamilySSF1182901.96E-2482143IPR003657WRKY domain
SMARTSM007748.9E-3484144IPR003657WRKY domain
PfamPF031063.4E-2586142IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MDGEWSDGAA ASSPTVSGGE GKAGPRGVPA EDSPGSPVSP AAAPSTAAPA ASRRRRSANK  60
RVVTLPLADV SGPRPKGVGE GNTPTDSWAW RKYGQKPIKG SPFPRAYYRC SSNKGCPARK  120
QVERDRAKPD TVIVTYSFEH NHSDAVPRAQ QNRQQAPKPK PQPAPPEPSE SPSSGSHDVA  180
ATACAGALVT TEGGAAAVEV HDDFRWLYDG VSVTSSTSPS DVDVAEEMLY GTMFFGATVG  240
APLPDEFGDV GGLFDGEGGG EEDAMFAGLG ELPECAMVFR RHAGDGLPMA GGEKVEQPAE  300
STAMS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-15861421974Probable WRKY transcription factor 4
2ayd_A4e-15861421671WRKY transcription factor 1
2lex_A4e-15861421974Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G306000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969837.10.0probable WRKY transcription factor 65
TrEMBLK3XKE20.0K3XKE2_SETIT; Uncharacterized protein
STRINGSi002365m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109473341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.12e-36WRKY DNA-binding protein 69