PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Seita.5G294500.1.p | ||||||||
Common Name | SETIT_004464mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 221aa MW: 23602.4 Da PI: 7.4541 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.6 | 8.4e-31 | 135 | 193 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+vk+s++pr+YYrC+++gC+vkk+ver+++dp++v+++Yeg Hnh Seita.5G294500.1.p 135 LDDGYKWRKYGKKSVKNSPNPRNYYRCSTEGCNVKKRVERDKDDPSYVVTMYEGVHNHV 193 59********************************************************5 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.6E-32 | 122 | 194 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-27 | 128 | 194 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.664 | 130 | 195 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-34 | 135 | 194 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.3E-24 | 136 | 192 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 221 aa Download sequence Send to blast |
MHMALASCNS LADAVFLDMA YRNPCDGGLA STFYGGAGSP AAAFLRPAFG AAPADLAPQQ 60 RQPDALECLS DDGVSSVVVP GTFGTPPPPP PRMPVVPDAS GYAHARGTAA VAGEGSTPRT 120 TDRIAFRMRS EEEVLDDGYK WRKYGKKSVK NSPNPRNYYR CSTEGCNVKK RVERDKDDPS 180 YVVTMYEGVH NHVSPGTIYY ATQDAASGRF FVAGMHQFGP * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-23 | 125 | 195 | 7 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 4e-23 | 125 | 195 | 7 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Seita.5G294500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004969741.1 | 1e-163 | probable WRKY transcription factor 57 | ||||
TrEMBL | A0A368RA45 | 1e-161 | A0A368RA45_SETIT; Uncharacterized protein | ||||
STRING | Si004464m | 1e-160 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP441 | 37 | 206 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G64810.1 | 8e-39 | WRKY DNA-binding protein 51 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Seita.5G294500.1.p |