PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Seita.5G289500.1.p | ||||||||
Common Name | LOC101776776, SETIT_002467mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 288aa MW: 31397.9 Da PI: 10.3081 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.4 | 2.8e-12 | 5 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT+eE+e l ++v ++G g W+tI + R+ ++k++w+++ Seita.5G289500.1.p 5 KQKWTQEEEEALRRGVLKHGAGKWRTIQKDPEfspvlSSRSNIDLKDKWRNL 56 79***********************************9************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.8 | 1 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.96E-15 | 2 | 58 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.8E-8 | 4 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.9E-9 | 5 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-14 | 5 | 56 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 5.67E-20 | 6 | 56 | No hit | No description |
SMART | SM00526 | 2.4E-15 | 110 | 175 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene3D | G3DSA:1.10.10.10 | 4.7E-13 | 110 | 175 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PROSITE profile | PS51504 | 24.409 | 112 | 181 | IPR005818 | Linker histone H1/H5, domain H15 |
Pfam | PF00538 | 3.3E-9 | 114 | 173 | IPR005818 | Linker histone H1/H5, domain H15 |
SuperFamily | SSF46689 | 8.96E-15 | 114 | 149 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 288 aa Download sequence Send to blast |
MGAPKQKWTQ EEEEALRRGV LKHGAGKWRT IQKDPEFSPV LSSRSNIDLK DKWRNLSFSA 60 SGLGSRDKMR VPKISGPSSS PASSSQAQLL PVANKVAEAS QDAEKKPQDG KTPPKYGAMI 120 LEALSELNEP NGSEISAIFG FIEQRHEVQP TFRRLLSSKL RRLAESKKIE KVDNKLYRLV 180 DSSATRTLAP IKASAPKQKD LSKPSKVSKN LGLFVATSPA LEAAMAAAAK VADAEAKAHD 240 AHDQMMEVER ILKMAEETES LLTVAAIAYD RCSRGEITTL NPAPRKL* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00652 | PBM | Transfer from LOC_Os01g51154 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Seita.5G289500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004969705.1 | 0.0 | single myb histone 4 | ||||
Swissprot | Q6WLH4 | 1e-144 | SMH3_MAIZE; Single myb histone 3 | ||||
TrEMBL | K3XKP4 | 0.0 | K3XKP4_SETIT; Uncharacterized protein | ||||
STRING | Si002467m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9247 | 34 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G17520.1 | 4e-48 | MYB_related family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Seita.5G289500.1.p |
Entrez Gene | 101776776 |
Publications ? help Back to Top | |||
---|---|---|---|
|