PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.5G289400.2.p

Common Name

LOC101776109, SETIT_001743mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bHLH

Protein Properties

Length: 399aa MW: 41272.5 Da PI: 8.4675

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.5G289400.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.5	3.7e-06	289	329	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+r+ +++ L++l+P K++ a++L +A Y+k L Seita.5G289400.2.p 289 ARLRRERVSERLRVLQKLVPGG-----SKMDTASMLDEAASYLKFL 329 599***************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.99E-10	271	334	No hit	No description
PROSITE profile	PS50888	14.449	280	329	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.8E-13	286	338	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.6E-12	286	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.8E-10	289	338	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MDATFGWAGA GHHVDDYFSR QVGCGRFEVD EAFLGDCFGQ LQCDGVLAAA AAGGGDTGAC 60 HATSNCGAFE GSAGMDSDPL AFLGAGTGDV FDAGLLDAAL AFTRSSARAA PTRGRVERRH 120 ALSYSGTTGG NISSGESNNY SGGHEAEVVS PTSTMSPTTA PRPFTHASSS QQQALHAKRK 180 VTDEYPATIA TTAPPPAPFP RPGGGANKRR AATSISFGHG AQHSARDAAA SAGYEPDMEA 240 MAQVKEMIYR AAAMRPVNLG PEISAAAAAT EKPRRKNVRI SSDPQTVAAR LRRERVSERL 300 RVLQKLVPGG SKMDTASMLD EAASYLKFLK SQVQALETLG TTNTSSTSAS SRSQHYSYFG 360 SGSGSNPGFP GFGRRSSSIS PSGYVNPNGS TNTSSNLL*

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MDATFGWAGA GHHVDDYFSR QVGCGRFEVD EAFLGDCFGQ LQCDGVLAAA AAGGGDTGAC  60
HATSNCGAFE GSAGMDSDPL AFLGAGTGDV FDAGLLDAAL AFTRSSARAA PTRGRVERRH  120
ALSYSGTTGG NISSGESNNY SGGHEAEVVS PTSTMSPTTA PRPFTHASSS QQQALHAKRK  180
VTDEYPATIA TTAPPPAPFP RPGGGANKRR AATSISFGHG AQHSARDAAA SAGYEPDMEA  240
MAQVKEMIYR AAAMRPVNLG PEISAAAAAT EKPRRKNVRI SSDPQTVAAR LRRERVSERL  300
RVLQKLVPGG SKMDTASMLD EAASYLKFLK SQVQALETLG TTNTSSTSAS SRSQHYSYFG  360
SGSGSNPGFP GFGRRSSSIS PSGYVNPNGS TNTSSNLL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	270	276	EKPRRKN
2	271	276	KPRRKN
3	289	294	RLRRER

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the negative regulation of flowering. May be involved in the repression of the flowering factor GI and HD1 by interacting with PIL13 and PIL15 and competing with PRR1. Possesses transactivation activity in yeast. {ECO:0000269\|PubMed:21549224}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.5G289400.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK355455	1e-106	AK355455.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1020N05.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012701869.1	0.0	transcription factor bHLH69
Swissprot	A0A0P0WQ90	2e-47	LF_ORYSJ; Transcription factor LATE FLOWERING
TrEMBL	K3XIM1	0.0	K3XIM1_SETIT; Uncharacterized protein
STRING	Si001743m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	3e-34	bHLH family protein

Link Out ? help Back to Top
Phytozome	Seita.5G289400.2.p
Entrez Gene	101776109

Publications ? help Back to Top
Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224]