PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G288300.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 427aa    MW: 44788.6 Da    PI: 8.6556
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G288300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.72.1e-13277323455
                         HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         +h e+Er+RR+++N++f  Lr ++Pk +      K++Ka+ L  A+ YI++L+
  Seita.5G288300.1.p 277 NHVEAERQRREKLNQRFYALRAVVPKiS------KMDKASLLSDAIAYIQELE 323
                         799***********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.9E-3341197IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.047273322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-16276327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-16276326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.42E-15276327No hitNo description
PfamPF000106.4E-11277323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-16279328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MAWSETDAAL FAAVLGRDAA HHLATTPPHL DGPPASAAPE LQARLQDLVE RGGGVWTYGI  60
FWQESRGARG RVVLGWGDGH CRDGGAPHDA AAGADYALRL DRVTGAEMYF LASMYFSFPE  120
GAGGPGHALA SGRHAWAAVD PHPRGAGAAP GWYVRASLAQ TAGLRTVVFL PCKGGVLELG  180
SDVAVRETPE ALRAIQSALA VAPAPPSPAT NWAPQPGGHA TASTPPDKTE AAKPKPPEPP  240
KSIDFSKAGK PGQAGGEERR PRKRGRKPAN GREEPLNHVE AERQRREKLN QRFYALRAVV  300
PKISKMDKAS LLSDAIAYIQ ELEDRLRGGG GGVAPAARAE SPAVEVKAMQ DEVVLRVTTP  360
LYAHPVSRVF HAIRDAQLSV AASDVAVADD AVTHTLVLRS AGPEQLTAET VLAAMSRGMT  420
SATPSP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-27271361282Transcription factor MYC2
5gnj_B3e-27271361282Transcription factor MYC2
5gnj_E3e-27271361282Transcription factor MYC2
5gnj_F3e-27271361282Transcription factor MYC2
5gnj_G3e-27271361282Transcription factor MYC2
5gnj_I3e-27271361282Transcription factor MYC2
5gnj_M3e-27271361282Transcription factor MYC2
5gnj_N3e-27271361282Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1258266RRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G288300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9680150.0EU968015.1 Zea mays clone 312846 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682967.10.0LOW QUALITY PROTEIN: transcription factor bHLH13-like
TrEMBLA0A368RA730.0A0A368RA73_SETIT; Uncharacterized protein
STRINGSi004795m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73852944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.14e-49bHLH family protein