PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G283200.1.p
Common NameSETIT_004316mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB
Protein Properties Length: 279aa    MW: 29302.8 Da    PI: 7.9645
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G283200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.81.2e-183481148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT+eEdell++av++ G g+W+t +r+ g+ R++k+c++rw +yl
  Seita.5G283200.1.p 34 RGAWTPEEDELLARAVAREGEGRWRTLPRRAGLLRCGKSCRLRWMNYL 81
                        89******************************99************97 PP
2Myb_DNA-binding48.12.7e-1588132248
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         g+  ++E++l+v+++++lG++ W++Ia +++ gRt++++k++w+++l
  Seita.5G283200.1.p  88 GPIAADEEDLIVRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 132
                         566689***************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.8242981IPR017930Myb domain
SuperFamilySSF466891.91E-2832128IPR009057Homeodomain-like
SMARTSM007171.4E-133383IPR001005SANT/Myb domain
PfamPF002491.7E-163481IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-213588IPR009057Homeodomain-like
CDDcd001672.56E-113681No hitNo description
PROSITE profilePS5129425.24282136IPR017930Myb domain
SMARTSM007176.2E-1486134IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.9E-2589137IPR009057Homeodomain-like
PfamPF002491.6E-1391132IPR001005SANT/Myb domain
CDDcd001674.70E-1192132No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MTRKQPAARR RGGGGGGGGG AVAGEGTTRA ALKRGAWTPE EDELLARAVA REGEGRWRTL  60
PRRAGLLRCG KSCRLRWMNY LRPDIKRGPI AADEEDLIVR LHRLLGNRWS LIAGRLPGRT  120
DNEIKNYWNS HLSKKLIARG IDPRTHTPLA AAAAPAPDKT PPPPPAVKPK PPVAPPPPPP  180
PEQPGSSSGA GGVGDDDDGG RDFPAMTGLG ADVFEGLDDP FCALDAAGRG GFGMGCAMVD  240
DGTFSSFLDS LVSENQLAYY FGDHKNAEGG DNDDQAGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-24321365108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G283200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1082591e-136AK108259.1 Oryza sativa Japonica Group cDNA clone:002-141-A12, full insert sequence.
GenBankD886201e-136D88620.1 Oryza sativa mRNA for OSMYB4, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682450.10.0transcription factor MYB4
SwissprotQ388506e-69MYB5_ARATH; Transcription repressor MYB5
TrEMBLK3XQX70.0K3XQX7_SETIT; Uncharacterized protein
STRINGSi004316m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.12e-65myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]