PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G274200.1.p
Common NameLOC101757724, SETIT_002350mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB
Protein Properties Length: 309aa    MW: 32990.1 Da    PI: 8.3236
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G274200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81e-171462148
                        TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                        rg+W++eEdell  +v+ +G+g +W + +++ g++R++k+c++rw++yl
  Seita.5G274200.1.p 14 RGPWSPEEDELLRSYVQNHGTGgNWIALPHKAGLNRCGKSCRLRWLNYL 62
                        89*********************************************97 PP
2Myb_DNA-binding37.26.9e-1271111446
                         S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          T++Ed ++  + +  G++ W+ Ia++++ gRt++++k++w++
  Seita.5G274200.1.p  71 YTEQEDRIICSLYNSIGSR-WSIIASKLP-GRTDNDVKNYWNT 111
                         69*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.083966IPR017930Myb domain
SuperFamilySSF466895.85E-2811109IPR009057Homeodomain-like
SMARTSM007171.5E-121364IPR001005SANT/Myb domain
PfamPF002491.2E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-241569IPR009057Homeodomain-like
CDDcd001671.61E-91662No hitNo description
PROSITE profilePS5129414.5767117IPR017930Myb domain
SMARTSM007171.3E-1167115IPR001005SANT/Myb domain
PfamPF002491.3E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-2270116IPR009057Homeodomain-like
CDDcd001671.14E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MGRAPCCDKT SVKRGPWSPE EDELLRSYVQ NHGTGGNWIA LPHKAGLNRC GKSCRLRWLN  60
YLRPDIKHGG YTEQEDRIIC SLYNSIGSRW SIIASKLPGR TDNDVKNYWN TKLKKKAIAM  120
NQQQQDYYHH QRGSGGRGRR GAPQTQCASM HPSPASASSA VTTASPGDAA CSFGPMFSSP  180
TPLQAQAVLA RYDGAATAPL PPLQQQHQAS SLAEFSPAPP PQPAGASIIN SWAGGLAIDD  240
MFLPELLGVG DFPPGDLFGG GFAPLLQDRA SSLQELAACY FPNAQAAEVW AAADHVKPPA  300
AGLCHSLT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G274200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794310.0HF679431.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB25 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969571.10.0transcription factor RAX2
TrEMBLK3XKC70.0K3XKC7_SETIT; Uncharacterized protein
STRINGSi002350m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.14e-70myb domain protein 84