PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.5G271800.1.p | ||||||||
Common Name | LOC101759368, SETIT_004887mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | LBD | ||||||||
Protein Properties | Length: 92aa MW: 9962.81 Da PI: 9.1868 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 74.9 | 1.5e-23 | 4 | 90 | 1 | 79 |
DUF260 1 aCaaCkvlrrkCakd..Cvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgv 79 +C++C+vlr++C++ C+++p++ p++q++++ +++k++G++ +l+ll+a+p ++ r+ +++sl+yeA+ r+ +PvyG+v++ Seita.5G271800.1.p 4 SCNGCRVLRKGCSDTctCTIRPCLqwiktPEAQANATVFLAKFYGRAGLLNLLAAAPADHlRPVVFRSLLYEACGRIVNPVYGSVSL 90 6************9855789************************************88877***********************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 13.555 | 3 | 91 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.3E-19 | 4 | 90 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 92 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSDTCT CTIRPCLQWI KTPEAQANAT VFLAKFYGRA GLLNLLAAAP 60 ADHLRPVVFR SLLYEACGRI VNPVYGSVSL L* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.5G271800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU954764 | 1e-107 | EU954764.1 Zea mays clone 1482325 hypothetical protein mRNA, complete cds. | |||
GenBank | KJ728404 | 1e-107 | KJ728404.1 Zea mays clone pUT6709 LOB transcription factor (LOB15) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004972094.1 | 6e-62 | LOB domain-containing protein 40 | ||||
Swissprot | Q9M886 | 4e-48 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | K3XSI8 | 1e-60 | K3XSI8_SETIT; Uncharacterized protein | ||||
STRING | Si004887m | 2e-61 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1235 | 37 | 127 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 3e-40 | LOB domain-containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | Seita.5G271800.1.p |
Entrez Gene | 101759368 |