PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.5G266800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | Dof | ||||||||
Protein Properties | Length: 169aa MW: 17191.5 Da PI: 10.429 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 90.7 | 1.2e-28 | 86 | 141 | 5 | 59 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGg.grrknk 59 l+cprC s++tkfCy+nny++ qPr++C++CrryWt+GGalr v + grr+ + Seita.5G266800.1.p 86 PLPCPRCGSRETKFCYFNNYNVRQPRHLCRSCRRYWTAGGALRRVASASpGRRRPR 141 679*****************************************987652555544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 3.5E-26 | 87 | 139 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 25.583 | 87 | 141 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 89 | 125 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 1.0E-18 | 89 | 130 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MANLPDADAA GFKLFGKVIQ PPDAHRAAEE GAGAPPPPPP PPQPPTPTPT MAVLPPAPPQ 60 SPPPPPPPLQ LQAAGAGAAA GGTGDPLPCP RCGSRETKFC YFNNYNVRQP RHLCRSCRRY 120 WTAGGALRRV ASASPGRRRP RPTARSAAAI ATASSASAAA AEEGGGER* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.5G266800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT061655 | 7e-89 | BT061655.1 Zea mays full-length cDNA clone ZM_BFb0169J01 mRNA, complete cds. | |||
GenBank | EU954609 | 7e-89 | EU954609.1 Zea mays clone 1473007 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004969505.1 | 1e-112 | dof zinc finger protein 5-like | ||||
TrEMBL | A0A368R917 | 1e-111 | A0A368R917_SETIT; Uncharacterized protein | ||||
STRING | Sb03g030850.1 | 7e-46 | (Sorghum bicolor) | ||||
STRING | GRMZM2G327189_P01 | 1e-45 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14716 | 16 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29160.1 | 2e-21 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.5G266800.1.p |