PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G259700.1.p
Common NameSETIT_003539mg, SETIT_003541mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 89aa    MW: 10071.1 Da    PI: 7.6812
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G259700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding301.2e-091761344
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                         W++ E++l+ +a + +G g   +W++++r mg  +t+ +++  +
  Seita.5G259700.1.p 17 TWSKREEKLFEEALAYYGEGtpdRWHKVSRAMGGSKTADEVRRQY 61
                        7********************************99******9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.2E-81467IPR001005SANT/Myb domain
SuperFamilySSF466898.22E-121673IPR009057Homeodomain-like
PROSITE profilePS500906.7951665IPR017877Myb-like domain
CDDcd001671.94E-61761No hitNo description
PfamPF002495.3E-81761IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-41761IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MSGSRSSSSH NVNMASTWSK REEKLFEEAL AYYGEGTPDR WHKVSRAMGG SKTADEVRRQ  60
YEILEDDVKL IESGRVPFPR YNTQGAWN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-221485177RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G259700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458271.14e-46protein RADIALIS-like 3
SwissprotQ6NNN05e-23RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLK3XNR84e-59K3XNR8_SETIT; Uncharacterized protein
STRINGSi003539m7e-60(Setaria italica)
STRINGSi003541m7e-60(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.23e-23RAD-like 6