PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G254000.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GATA
Protein Properties Length: 244aa    MW: 24626.4 Da    PI: 7.2547
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G254000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.42.5e-20122156135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++
  Seita.5G254000.1.p 122 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 156
                         ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011414.246116152IPR000679Zinc finger, GATA-type
SMARTSM004011.9E-20116173IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.13E-14118157No hitNo description
Gene3DG3DSA:3.30.50.102.8E-17120156IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.42E-13121153No hitNo description
PROSITE patternPS003440122147IPR000679Zinc finger, GATA-type
PfamPF003205.5E-18122156IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MLHEAAPCTC GLLYGSCGGG CSLLFAAAAE DHYYRHCAGD GEAGFGGSGP YGGSVDCTLS  60
LGTPSTRRAE AGARAPAPSG ALHWEAAAPV PSSCNGGRQQ AESGAGRGAA EANHAAAGAR  120
RCANCDTTST PLWRNGPRGP KSLCNACGIR YKKEERRAAA AAVAPATLAT DGGVEYASYG  180
YARQPQQWGC YGPAAVAKAA SFGMFGDAAG EVDACLPWGL GVMPSSSPAF GAVREMPSLF  240
QYY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G254000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0734643e-42AK073464.1 Oryza sativa Japonica Group cDNA clone:J033044C20, full insert sequence.
GenBankAK1012873e-42AK101287.1 Oryza sativa Japonica Group cDNA clone:J033033F09, full insert sequence.
GenBankDQ7845463e-42DQ784546.1 Oryza sativa Japonica Group putative NECK LEAF 1 (NL1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969380.11e-173GATA transcription factor 15-like
TrEMBLA0A368RAC91e-172A0A368RAC9_SETIT; Uncharacterized protein
STRINGSb03g030310.11e-104(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.17e-19GATA transcription factor 19