PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G239400.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB
Protein Properties Length: 296aa    MW: 31608.1 Da    PI: 8.692
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G239400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.83.9e-165198148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT eEd++lv ++ ++G g+W+  ar  g++R +k+c++rw++yl
  Seita.5G239400.1.p 51 KGPWTLEEDLILVGYISEHGEGSWDNLARAAGLNRNGKSCRLRWLNYL 98
                        79********************************************97 PP
2Myb_DNA-binding44.14.7e-14105147246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         g+ T+ Ed  + ++++ lG++ W++I++ ++ gRt++++k++w++
  Seita.5G239400.1.p 105 GSITPAEDAAIRELHAALGNK-WSKISKLLP-GRTDNEIKNYWRT 147
                         5679*****************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.34446102IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-1946100IPR009057Homeodomain-like
SuperFamilySSF466897.76E-3049145IPR009057Homeodomain-like
SMARTSM007177.2E-1350100IPR001005SANT/Myb domain
PfamPF002492.7E-145198IPR001005SANT/Myb domain
CDDcd001674.03E-105398No hitNo description
Gene3DG3DSA:1.10.10.602.2E-23101152IPR009057Homeodomain-like
SMARTSM007179.1E-13103151IPR001005SANT/Myb domain
PROSITE profilePS5129418.566103153IPR017930Myb domain
PfamPF002491.1E-12105147IPR001005SANT/Myb domain
CDDcd001671.40E-10108147No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MTGAERSTST LASACVSSVR YRTDPRTESK EMATRVAMAC GRAGDQPAVR KGPWTLEEDL  60
ILVGYISEHG EGSWDNLARA AGLNRNGKSC RLRWLNYLRP GVRHGSITPA EDAAIRELHA  120
ALGNKWSKIS KLLPGRTDNE IKNYWRTRIQ KKPAAAAKAP HQQPPAAVVR EGASSAAGYY  180
CAKPDPADQQ AYWSQKAAVA AATAAAGVGS GEGVSSSTPT SQDSSTGAGD WRMQQTSSCP  240
YYSELMMSWI AGGHSETGVG VDALTTHFSS SGQFSDSFWN AVENFWETKP VTGAF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-26471523107B-MYB
1h8a_C7e-264715223127MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G239400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7281931e-121KJ728193.1 Zea mays clone pUT6467 MYB transcription factor (MYB53) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969273.10.0transcription factor MYB21
TrEMBLA0A368R8G00.0A0A368R8G0_SETIT; Uncharacterized protein
STRINGSi003841m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132402633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40350.12e-52myb domain protein 24