PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G238500.1.p
Common NameSETIT_002888mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 92aa    MW: 10213.7 Da    PI: 9.4519
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G238500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.52.1e-101055144
                        TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                        r  WT+  d+l+ +a + + ++   +W+ Iar +g g+++++++ ++
  Seita.5G238500.1.p 10 RPQWTKKQDKLFEQALAVYDKEtpdRWHNIARAVG-GKSAEEVRRYY 55
                        678*****************99*************.*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.05863IPR017884SANT domain
SMARTSM007177.5E-10961IPR001005SANT/Myb domain
PfamPF002492.5E-81055IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-71165IPR009057Homeodomain-like
SuperFamilySSF466891.64E-131266IPR009057Homeodomain-like
CDDcd001671.93E-91355No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MASMSMSSSR PQWTKKQDKL FEQALAVYDK ETPDRWHNIA RAVGGKSAEE VRRYYEILVE  60
DVKRIEAGKV PFPAYRCPGG GAPANMTMGG Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-31181179RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G238500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0078582e-60AC007858.1 Oryza sativa (japonica cultivar-group) chromosome 5 clone BAC 10A19I, complete sequence.
GenBankAC1209882e-60AC120988.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0017N18, complete sequence.
GenBankAK2415282e-60AK241528.1 Oryza sativa Japonica Group cDNA, clone: J065171E20, full insert sequence.
GenBankAP0149612e-60AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126132e-60CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
GenBankCT8363542e-60CT836354.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA043L05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969265.13e-63protein RADIALIS-like 3
SwissprotQ1A1734e-32RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A368R8436e-62A0A368R843_SETIT; Uncharacterized protein
TrEMBLK3XLW52e-61K3XLW5_SETIT; Uncharacterized protein
STRINGSi002888m3e-62(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-34RAD-like 6