PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.5G233300.1.p | ||||||||
Common Name | LOC101754496, SETIT_002292mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | HSF | ||||||||
Protein Properties | Length: 318aa MW: 34752.2 Da PI: 6.3994 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 104.3 | 1e-32 | 28 | 119 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 F+ k+y+++ d++++ l++w +++nsfvv+d+ f++ +Lp +Fkhsnf+SFvRQLn+YgF+kv+ ++ weF+h+sF +g+++ Seita.5G233300.1.p 28 FVAKTYQMVCDPRTDALVRWGRENNSFVVVDPAGFSRLLLPCFFKHSNFSSFVRQLNTYGFRKVHPDR---------WEFAHESFLRGQTH 109 9********************999*****************************************999.........************** PP XXXXXXXXXX CS HSF_DNA-bind 93 llekikrkks 102 ll +i r+k+ Seita.5G233300.1.p 110 LLPRIVRRKK 119 *******987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 3.5E-51 | 24 | 117 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 9.1E-36 | 24 | 117 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.09E-33 | 25 | 117 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 4.9E-29 | 28 | 117 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.0E-16 | 28 | 51 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.0E-16 | 66 | 78 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 67 | 91 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.0E-16 | 79 | 91 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MDGLHTELAL GLLGCGGGGG DQLQTAPFVA KTYQMVCDPR TDALVRWGRE NNSFVVVDPA 60 GFSRLLLPCF FKHSNFSSFV RQLNTYGFRK VHPDRWEFAH ESFLRGQTHL LPRIVRRKKR 120 GEGGGGAASC SSVGEAQYAA ASCAIRGEDH QEGQDQEERE ALLEEVQRLR REQTAIGEEL 180 AQMSRRLQAT ERRPDQLMSF LARLAEDPDG VTRHLVEQAA EKKRRRMQLS SQAISPLPPP 240 LLALGGKDCD GWQWAEQKPA IVLPSFEPTS SYCAVQQVPD FGGGNGGGGG ITGMGLTADD 300 TAVEMPFPFC LLGQGFF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-22 | 13 | 117 | 14 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-22 | 13 | 117 | 14 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-22 | 13 | 117 | 14 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.5G233300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK069479 | 1e-143 | AK069479.1 Oryza sativa Japonica Group cDNA clone:J023019J23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004969221.1 | 0.0 | heat stress transcription factor C-1a | ||||
Swissprot | Q6VBA4 | 1e-134 | HFC1A_ORYSJ; Heat stress transcription factor C-1a | ||||
TrEMBL | K3XK69 | 0.0 | K3XK69_SETIT; Uncharacterized protein | ||||
STRING | Si002292m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP121 | 37 | 394 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24520.1 | 1e-57 | heat shock transcription factor C1 |
Link Out ? help Back to Top | |
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Phytozome | Seita.5G233300.1.p |
Entrez Gene | 101754496 |
Publications ? help Back to Top | |||
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