PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.5G226900.5.p | ||||||||
Common Name | LOC101768560, SETIT_000968mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | C3H | ||||||||
Protein Properties | Length: 410aa MW: 45312.6 Da PI: 7.8592 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37.1 | 5.4e-12 | 37 | 62 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C f++rt tCkyG+ CkF H++ Seita.5G226900.5.p 37 REKDCAFYMRTRTCKYGEACKFDHPQ 62 6789********************97 PP | |||||||
2 | zf-CCCH | 20 | 1.2e-06 | 86 | 112 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++ ++ tC++ +rCkF+H++ Seita.5G226900.5.p 86 PGEPDCPYLVKSNTCRFKSRCKFNHPK 112 5789*********************96 PP | |||||||
3 | zf-CCCH | 40.4 | 4.9e-13 | 141 | 165 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+f+a+tG Ck+G++CkF+H++ Seita.5G226900.5.p 141 EPVCSFYAKTGKCKFGANCKFNHPM 165 789********************95 PP | |||||||
4 | zf-CCCH | 36.9 | 6.1e-12 | 215 | 240 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+++tG CkyG+ C+F+H+ Seita.5G226900.5.p 215 PGEVDCSFYMKTGSCKYGSICRFNHP 240 57899********************9 PP | |||||||
5 | zf-CCCH | 34.4 | 3.6e-11 | 300 | 325 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ C+f+++tG+Cky +CkF+H++ Seita.5G226900.5.p 300 GETVCDFYMKTGFCKYSQKCKFHHPM 325 6789********************95 PP | |||||||
6 | zf-CCCH | 35.2 | 2e-11 | 356 | 379 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 e C f++r+GtC+yG+ CkF H+p Seita.5G226900.5.p 356 EACAFYMRSGTCRYGAHCKFDHPP 379 78********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 7.46E-6 | 33 | 62 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.695 | 35 | 63 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.1E-4 | 35 | 62 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-9 | 37 | 62 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-4 | 41 | 61 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.53 | 85 | 112 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.671 | 85 | 113 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.9E-4 | 87 | 112 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.277 | 138 | 166 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-6 | 138 | 166 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.4E-7 | 138 | 165 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-10 | 141 | 165 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-5 | 143 | 163 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.788 | 214 | 242 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.7E-6 | 214 | 241 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-9 | 216 | 240 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-5 | 218 | 242 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.5E-4 | 220 | 239 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.732 | 298 | 326 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.3E-6 | 298 | 325 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.67E-7 | 299 | 327 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.0E-9 | 300 | 325 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.0E-5 | 303 | 323 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.065 | 352 | 380 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-6 | 352 | 379 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.06E-6 | 355 | 380 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.4E-5 | 356 | 377 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.9E-9 | 356 | 379 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
MGSHSTVAQN EALYSPNTMA KRPRLESSLP IYPQRPREKD CAFYMRTRTC KYGEACKFDH 60 PQWVPEGGVP NWKEVPNVED YYPERPGEPD CPYLVKSNTC RFKSRCKFNH PKEKVNALEA 120 GTDNEHSLIA DSAILPVRPS EPVCSFYAKT GKCKFGANCK FNHPMPSVIA KETIYTATTD 180 AAAHIGAADD LVPAKMHAPT APSEAHNPKG LPIRPGEVDC SFYMKTGSCK YGSICRFNHP 240 YRPVVDIALI APLVQTTLPT PAPIISAPML NPATNVLQSF DFHVTHVPIE PVPIYPQRPG 300 ETVCDFYMKT GFCKYSQKCK FHHPMNRSEP GANGNWDPEQ PVTLTLAGLP RREGAEACAF 360 YMRSGTCRYG AHCKFDHPPP QEAIAKLQAA GKEDEEKKEG EAKEGSVVP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.5G226900.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004969171.1 | 0.0 | zinc finger CCCH domain-containing protein 8 | ||||
Swissprot | Q5ZDJ6 | 0.0 | C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8 | ||||
TrEMBL | A0A368R809 | 0.0 | A0A368R809_SETIT; Uncharacterized protein | ||||
TrEMBL | K3XGE8 | 0.0 | K3XGE8_SETIT; Uncharacterized protein | ||||
STRING | Si000968m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-127 | floral homeotic protein (HUA1) |
Link Out ? help Back to Top | |
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Phytozome | Seita.5G226900.5.p |
Entrez Gene | 101768560 |
Publications ? help Back to Top | |||
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