PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G225300.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family M-type_MADS
Protein Properties Length: 420aa    MW: 46714.9 Da    PI: 6.1908
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G225300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.91.5e-141259249
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                        +ie+++ r+ tf kRr gi+K A+ LS+L++++vav++ s + ++  +
  Seita.5G225300.1.p 12 FIEDDRDRSLTFFKRRYGIFKAASDLSTLTGTRVAVVLESINERFSSF 59
                        8*************************************9999888766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.035363IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-9362IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-5525IPR002100Transcription factor, MADS-box
CDDcd002663.74E-14671No hitNo description
SuperFamilySSF554552.88E-14773IPR002100Transcription factor, MADS-box
PfamPF003191.6E-151259IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-52540IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-54061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MPRRSRRSGV RFIEDDRDRS LTFFKRRYGI FKAASDLSTL TGTRVAVVLE SINERFSSFG  60
TPDASPIVDA FLSGDMPTEF DTSEEQKVKI TNLQNEMFQL EKDKAMEDKR KKENIAWTKE  120
IQETSRMTKY VYGKEDDLDA TELYEMYREL SRIKQETDER LTTLLHDNNV EADGRLRDSS  180
LLQPSWWRSM HPQVTPPKYS PWAPLQASFQ HQGSSSSHQV LARLGSSCSY SVMFPSQQVQ  240
PKLQHRPLVP LAPSIVRLQA PTSKEAYPFK YNIRGLDISG KKSYPLSFSP ISPSPPSQPP  300
SLQTPPSNDS SPQSLSPQFS SPMDLVPQQL PSNAQNYNSL HPPQNYANAS STYELDFELG  360
NTSGNGGQTG GAHIKGFDLS TPQQGDGCLR VTPEASSAGG ISNGDDAGSN LGDLNFPWY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G225300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971997.10.0transcription factor RLM1
TrEMBLA0A368R7Z00.0A0A368R7Z0_SETIT; Uncharacterized protein
STRINGSi003866m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28460.19e-11AGAMOUS-like 59