PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.5G220600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 184aa MW: 20801.3 Da PI: 4.7551 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 47.8 | 1.8e-15 | 11 | 61 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ie+++ + tf +Rr ++K A+ELS+L++a+v v++ s++ k+ +s+ Seita.5G220600.1.p 11 KFIEDERDHSLTFFNRRSRLFKDASELSTLTGARVTVVVESKNKKVSSFST 61 79*********************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.2E-7 | 2 | 62 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 15.264 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-5 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 4.15E-12 | 6 | 62 | No hit | No description |
SuperFamily | SSF55455 | 1.44E-14 | 9 | 73 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.9E-16 | 12 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-5 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-5 | 40 | 61 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MPRRVKRSGV KFIEDERDHS LTFFNRRSRL FKDASELSTL TGARVTVVVE SKNKKVSSFS 60 TPDAGPIVDT FLSEDASTEF NTIKGGKVKS TTLQNESFHL EKSKAVEDNM EENMMQAKDI 120 QETSRMAKYV YGKVEDLNAT ELIEMCSKLS EIEQEIEDLL SINFNSSSSI QESNFGDLNF 180 PWY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.5G220600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004971988.1 | 1e-117 | serum response factor homolog A | ||||
TrEMBL | A0A368R976 | 1e-131 | A0A368R976_SETIT; Uncharacterized protein | ||||
STRING | Si003888m | 1e-116 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3089 | 22 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 5e-08 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
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Phytozome | Seita.5G220600.1.p |