PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G208300.1.p
Common NameLOC101780831, SETIT_001494mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 438aa    MW: 46071.1 Da    PI: 4.8609
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G208300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.57.3e-11249293554
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         h + Er+RR+++N++f +Lr+llP++      K +K ++L  A  ++k L
  Seita.5G208300.1.p 249 HMMSERKRREKLNDSFLTLRSLLPPC-----SKKDKTTVLINAASFLKTL 293
                         7899*********************9.....6999********9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-16242310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.253244293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-8249294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.37E-12249298No hitNo description
Gene3DG3DSA:4.10.280.101.4E-14249309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-11250299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MDEVWSCLQD LQQLQDGDLA GLHPSPDLHD HDPFWPALAD CAASFLAGDD TACFGVAGID  60
LSGGSATGNA VDGMDTASFF AENDDNHHLM HQQEQQQPVY SSSSLSSKRS LSIDSGGSSS  120
TFFSLDAAAA GIFSSSHHSE APAATQDPFA GGEDEALMRA MVAIISSASP SSSESSSPPL  180
SQDTTAALAA VAQPRPCGGN ASNVTVRSTS LAVGPEGTTS LSSAAGGGRQ QEEDTRAAAG  240
SNNSSQVYHM MSERKRREKL NDSFLTLRSL LPPCSKKDKT TVLINAASFL KTLEAQVSEL  300
EEKNARLERY VPREGATAVA AHHRRAKVHI SRAASGDRQV ISLVVMVMVE CDIVDLVLHV  360
LECLRWMSGV SVLSVDADTY SPQAPLKARA NIKLHITDGD CWNEALFHET MTKTVHDATS  420
FPSSSSCAAP APLVAAA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1252257ERKRRE
2253258RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G208300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969032.10.0putative transcription factor bHLH041
TrEMBLK3XHX20.0K3XHX2_SETIT; Uncharacterized protein
STRINGSi001494m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101743136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.14e-21bHLH family protein