PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G207000.1.p
Common NameSETIT_004605mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HSF
Protein Properties Length: 388aa    MW: 42627.1 Da    PI: 5.5488
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G207000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind104.49.8e-33811742102
                         HHHHHHHHHCTGGGTTTSEES..SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
        HSF_DNA-bind   2 Flkklyeiledeelkelisws..engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                         F+ k+ye++ de+++ ++sw     gnsfvv+d++ +a  +Lp++Fkh+nfaSF+RQLn+YgF+kv+ ++         weF+h+sF +g+
  Seita.5G207000.1.p  81 FVAKTYEMVADEATDAVVSWApgGAGNSFVVWDPQALAVGLLPRFFKHTNFASFIRQLNIYGFRKVNPDR---------WEFAHESFLAGQ 162
                         9********************55556*****************************************999.........************ PP

                         XXXXXXXXXXXX CS
        HSF_DNA-bind  91 kellekikrkks 102
                         k+ll+kikr++ 
  Seita.5G207000.1.p 163 KHLLRKIKRRRA 174
                         *********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004157.7E-5277172IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.63E-3078172IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.9E-3478172IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.2E-2981172IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-1781104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-17121133IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340122146IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-17134146IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MASSSSSSSC PLAPRPSGGS QRTTTRASGG GLGLGGEAMA RCAAAVKREP EPEPWAGEAE  60
AAGSVAVLPR PVEEPPMPAP FVAKTYEMVA DEATDAVVSW APGGAGNSFV VWDPQALAVG  120
LLPRFFKHTN FASFIRQLNI YGFRKVNPDR WEFAHESFLA GQKHLLRKIK RRRAPKPQME  180
AHPRNGASIC FKQPKDSGEV ESLKRDRAAL RAEVLTLKQQ YSSCKSQLVA LEERILNNER  240
NQQKAIAFFA KVLSNPTFVQ QVLLNYAANK ELYSTAKRKR LMENEEQRVG TLKNGLEPTL  300
ATEASASAAS SDGSAVAKHE PMPEWNYQEM DNIWEDVWDE LDAIPGAEMD QEDKAAAGFE  360
VEEFTGRPCG WVDDCPYLVE QMQFVEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A4e-23771727110Heat shock factor protein 1
5hdn_A4e-23771727110Heat shock factor protein 1
5hdn_B4e-23771727110Heat shock factor protein 1
5hdn_C4e-23771727110Heat shock factor protein 1
5hdn_D4e-23771727110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G207000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969018.20.0heat stress transcription factor A-6a
SwissprotQ657C01e-149HFA6B_ORYSJ; Heat stress transcription factor A-6a
TrEMBLK3XRR10.0K3XRR1_SETIT; Uncharacterized protein
STRINGSi004605m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-66heat shock transcription factor A2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]