PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G178400.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 287aa    MW: 30751.3 Da    PI: 4.4656
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G178400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.67.3e-1472110346
                 AP2   3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaa 46 
                         y+GVr +k +g+W+AeIr  +     + kr +lg+f+t  +Aa aa
  Seita.5G178400.1.p  72 YRGVRLRK-WGKWAAEIRNpF-----TgKRQWLGTFDT-AGAASAA 110
                         9*****99.**********55.....45**********.7777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.92471129IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-1871122IPR001471AP2/ERF domain
PfamPF008472.5E-871110IPR001471AP2/ERF domain
SMARTSM003801.4E-1271134IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-1471120IPR016177DNA-binding domain
PRINTSPR003676.1E-87283IPR001471AP2/ERF domain
CDDcd000187.07E-1672103No hitNo description
PRINTSPR003676.1E-894110IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MRQGLNGWNK SSSMLRDGFG VKYSGFLHIR PTGPVKSKRF SFEMFVGKAP PKPVLPAATV  60
AASTSGGSPE SYRGVRLRKW GKWAAEIRNP FTGKRQWLGT FDTAGAASAA YLSASRSFAD  120
EKRRRRGQPV PASSPASSAS ATPTASSSSS TSAAPFAHPS PSSVLEATKP ALKAESPEPV  180
ATPILPSTEA AQLPDDPEFY QDLLRGLQLP DIDPMDFRAG LDALDVSDAP FCLDDDQDLL  240
FGDFADEELD EIDLDLDDIN DVFPEIPGCD LGRGMDDFLQ TVDFCV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G178400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9563570.0EU956357.1 Zea mays clone 1561240 pathogenesis-related transcriptional activator PTI6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968058.10.0ethylene-responsive transcription factor ERF118
TrEMBLA0A368R5Y90.0A0A368R5Y9_SETIT; Uncharacterized protein
STRINGSi002186m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129302528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.25e-12related to AP2 2