PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.5G158200.1.p | ||||||||
Common Name | LOC105914476, SETIT_003350mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 124aa MW: 13337.7 Da PI: 11.7336 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 19.6 | 1.7e-06 | 55 | 104 | 9 | 55 |
HHHHHHHHHHHHHHHHCTSCCC........TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkas.....kapskKlsKaeiLekAveYIksLq 55 r+R++ i+ ++e Lr+l+P + +a++++l+ e L +A YI Lq Seita.5G158200.1.p 55 RRKRVEAIRRKMEALRRLVPACEggdgeRADDGRLE--ELLLHAAGYILRLQ 104 69*******************988999999999999..99999999999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 8.88 | 46 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.75E-8 | 46 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.0E-7 | 56 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
MAAHACYGGG VAGAAPAAAA ARRLKLGRPS RSSLMKARKL RKGGGKCRPR SAASRRKRVE 60 AIRRKMEALR RLVPACEGGD GERADDGRLE ELLLHAAGYI LRLQMQVRVM QVMVHALNNP 120 PED* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.5G158200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012701703.1 | 3e-81 | uncharacterized protein LOC105914476 | ||||
TrEMBL | K3XN77 | 7e-80 | K3XN77_SETIT; Uncharacterized protein | ||||
STRING | Si003350m | 1e-80 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9111 | 21 | 26 |
Link Out ? help Back to Top | |
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Phytozome | Seita.5G158200.1.p |
Entrez Gene | 105914476 |