PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G152000.1.p
Common NameLOC101781503, SETIT_002517mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 277aa    MW: 28728.4 Da    PI: 7.2858
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G152000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.6e-1381127354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++h+e+ErrRR+riN  +++Lr+++P        K++Ka+ L +++ ++k+L
  Seita.5G152000.1.p  81 KSHSEAERRRRERINAHLATLRTMVPCT-----DKMEKAALLAEVITHVKKL 127
                         58*************************7.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.01578127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-1081127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.4E-1482129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.26E-1282132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-1184133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.0011191129No hitNo description
CDDcd048738.42E-5175244No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MGSVPFGDAG GLFDGFYGGF GFGGGGHGYE EYGLGQLGGA STSPVVVDGG TEEVDAAASA  60
ELEAPERKGD HRAEKVAMAL KSHSEAERRR RERINAHLAT LRTMVPCTDK MEKAALLAEV  120
ITHVKKLKAS AARIRTHCAV PADADDVAVE LVVPDAAPPS PSHHGAGGGF LVKATLSCDD  180
GADVFADIKS ALRPLRLRVV GSEVTTLGGR VRFTFLVSPP PCGAPGGDVR GVAESVRHAL  240
QSVLDKANSA LEFAPRASLL NKRRRVSTFE SSSSSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18691ERRRRE
2261265KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G152000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0844481e-60BT084448.2 Zea mays full-length cDNA clone ZM_BFb0115J18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968636.10.0transcription factor bHLH30
TrEMBLK3XKU40.0K3XKU4_SETIT; Uncharacterized protein
STRINGSi002517m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110112938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.15e-22bHLH family protein