PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G143700.1.p
Common NameSETIT_000892mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family BES1
Protein Properties Length: 348aa    MW: 36320.7 Da    PI: 8.8231
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G143700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822206.48e-64171611147
              DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspe 91 
                         +g+gr+ptw+ErEnnkrRERrRRaiaaki+aGLRa+G+yklpk++DnneVlkALc+eAGwvve+DGttyrkgskp+e+ +a+g+s s sp+
  Seita.5G143700.1.p  17 AGAGRMPTWRERENNKRRERRRRAIAAKIFAGLRAHGGYKLPKHCDNNEVLKALCNEAGWVVEPDGTTYRKGSKPQERVDAIGCSVSPSPC 107
                         589**************************************************************************************** PP

              DUF822  92 sslqsslkssalaspvesysaspksssfpspssldsislasa......asllpvlsvlslvs 147
                         ss+q         sp++sy+asp+sssfps +s+ +++ ++       + +lp+l++ls+ +
  Seita.5G143700.1.p 108 SSYQ--------LSPRASYNASPTSSSFPSGASSPFLPPNEMangidgNPILPWLKTLSNGT 161
                         ****........78888888888888888888877776665566677799999999988744 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056876.3E-6318158IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MASGGGGGGG GGALGVAGAG RMPTWREREN NKRRERRRRA IAAKIFAGLR AHGGYKLPKH  60
CDNNEVLKAL CNEAGWVVEP DGTTYRKGSK PQERVDAIGC SVSPSPCSSY QLSPRASYNA  120
SPTSSSFPSG ASSPFLPPNE MANGIDGNPI LPWLKTLSNG TPSKKHPLLP PLLIHGGSIS  180
APVTPPLSSP SARTPRMKTD WDESAVQPPW HGANSPSIVN STPPSPGRSM APDPAWLASI  240
QISSTSPNSP TFSLVSTNPF SVFKESISVG GNSSRMCTPG QSGTCSPAIP GMPRPSDVHM  300
MDAVSDEFAF GSSTNGAQQA AGLVRAWEGE RIHEDSGSDD LELTLKL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A1e-222191372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B1e-222191372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C1e-222191372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D1e-222191372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay function in brassinosteroid signaling. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00248DAPTransfer from AT1G78700Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G143700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968562.10.0protein BZR1 homolog 2
SwissprotQ0JPT41e-168BZR2_ORYSJ; Protein BZR1 homolog 2
TrEMBLA0A368R5130.0A0A368R513_SETIT; Uncharacterized protein
TrEMBLK3XG730.0K3XG73_SETIT; Uncharacterized protein
STRINGSi000892m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136638112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.12e-88BES1/BZR1 homolog 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]