PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G143400.1.p
Common NameSETIT_001636mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family DBB
Protein Properties Length: 332aa    MW: 34610.7 Da    PI: 5.3129
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G143400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.42.2e-06446541
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                         C+ +e  e++  C  ++  lC+ C    H        H++ p
  Seita.5G143400.1.p  4 LCSACEAAEARVLCCADEAALCARCDRDVHAAnrlagkHRRLP 46
                        7******99*********************6577888888877 PP
2zf-B_box30.11e-095595337
            zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                        +++C+ ++e ++ +fC +++ llC++C +  H        H
  Seita.5G143400.1.p 55 APTCDICQESHAYFFCVEDRALLCRSCDVVVHTAnafvsgH 95
                        689******99******************999545555556 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.793147IPR000315B-box-type zinc finger
SMARTSM003361.4E-9147IPR000315B-box-type zinc finger
CDDcd000213.20E-7347No hitNo description
PROSITE profilePS501199.79853100IPR000315B-box-type zinc finger
SMARTSM003361.0E-1653100IPR000315B-box-type zinc finger
PfamPF006437.5E-95596IPR000315B-box-type zinc finger
CDDcd000216.81E-1058100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MKVLCSACEA AEARVLCCAD EAALCARCDR DVHAANRLAG KHRRLPLHPP AAASAPTCDI  60
CQESHAYFFC VEDRALLCRS CDVVVHTANA FVSGHRRFLL TGVQVGLQPD AQDPEQPHPP  120
TSAASAAPAP AAPLPTPLPP PAKKARTSPA PLYSDDDIDW AVAGGPDVGI AGNLPDWPLV  180
DEQFSAPVPR PAAEAHVTRT PSKRSPRRPL AAAFTVQGGL AGGMPDWPLD EFFGFSEFNT  240
GLGFTENGTS KADSGKLGST DGSPAGRSSS DTAQDFFGQV PEFHHWSVPE LPSPPTASGL  300
HWQGGPRHGA AAADTAAVSV PDISAPEEML T*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G143400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0424801e-141BT042480.1 Zea mays full-length cDNA clone ZM_BFb0287P19 mRNA, complete cds.
GenBankBT0642771e-141BT064277.1 Zea mays full-length cDNA clone ZM_BFc0155A07 mRNA, complete cds.
GenBankBT0668551e-141BT066855.1 Zea mays full-length cDNA clone ZM_BFb0081H14 mRNA, complete cds.
GenBankEU9643641e-141EU964364.1 Zea mays clone 278314 B-box zinc finger family protein mRNA, complete cds.
GenBankHQ8588001e-141HQ858800.1 Zea mays clone UT1887 ORPHAN transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968561.10.0B-box zinc finger protein 22
TrEMBLK3XIB40.0K3XIB4_SETIT; Uncharacterized protein
STRINGSi001636m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17943382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.14e-40light-regulated zinc finger protein 1