PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G143100.2.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MIKC_MADS
Protein Properties Length: 257aa    MW: 28983.8 Da    PI: 9.2476
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G143100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.21.7e-313786150
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                        krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  Seita.5G143100.2.p 37 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 86
                        79***********************************************8 PP
2K-box101.98.8e-341052014100
               K-box   4 ssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                         s++   ++e +a+++qqe+akL+  i++Lq+++R ++G+ ++++sl++L+qLe +Lek++ kiR++Knell++++e++qk+e +lq++n++
  Seita.5G143100.2.p 105 SNS-GtVAEVNAQHYQQESAKLRGTISSLQNSNRTIMGDAIHTMSLRDLKQLEGRLEKGICKIRARKNELLYAEVEYMQKREMDLQSDNMY 194
                         233.25999********************************************************************************** PP

               K-box  94 Lrkklee 100
                         Lr+k++e
  Seita.5G143100.2.p 195 LRSKVAE 201
                         ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.3E-412988IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.2212989IPR002100Transcription factor, MADS-box
CDDcd002659.62E-4830103No hitNo description
SuperFamilySSF554554.32E-3330101IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-333151IPR002100Transcription factor, MADS-box
PROSITE patternPS0035003185IPR002100Transcription factor, MADS-box
PfamPF003199.8E-273885IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-335166IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-336687IPR002100Transcription factor, MADS-box
PfamPF014869.2E-25114199IPR002487Transcription factor, K-box
PROSITE profilePS5129713.796115205IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MLNMMTDLSC GPSTVTEQPP APTGSGDKPG RGKIEIKRIE NTTNRQVTFC KRRNGLLKKA  60
YELSVLCDAE VALIVFSSRG RLYEYANNSV KATIERYKKA NSDTSNSGTV AEVNAQHYQQ  120
ESAKLRGTIS SLQNSNRTIM GDAIHTMSLR DLKQLEGRLE KGICKIRARK NELLYAEVEY  180
MQKREMDLQS DNMYLRSKVA ENNERGQPPM NMMGAPSTSE YDHMAPYDSR NFHQVNIMQQ  240
PQHYSHQLQP TTLQLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A4e-2130116190Myocyte-specific enhancer factor 2A
3kov_B4e-2130116190Myocyte-specific enhancer factor 2A
3kov_I4e-2130116190Myocyte-specific enhancer factor 2A
3kov_J4e-2130116190Myocyte-specific enhancer factor 2A
3p57_A4e-2130116190Myocyte-specific enhancer factor 2A
3p57_B4e-2130116190Myocyte-specific enhancer factor 2A
3p57_C4e-2130116190Myocyte-specific enhancer factor 2A
3p57_D4e-2130116190Myocyte-specific enhancer factor 2A
3p57_I4e-2130116190Myocyte-specific enhancer factor 2A
3p57_J4e-2130116190Myocyte-specific enhancer factor 2A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the development of floral organs. Acts as C-class protein in association with MADS58. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3) and floral meristem determinacy (whorl 4), but not in the regulation of carpel morphogenesis. Plays a more predominant role in controlling lodicule development and in specifying stamen identity than MADS58. {ECO:0000269|PubMed:11828031, ECO:0000269|PubMed:16326928, ECO:0000269|PubMed:9869408}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G143100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9608100.0EU960810.1 Zea mays clone 228787 MADS-box transcription factor 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968556.10.0MADS-box transcription factor 3 isoform X1
SwissprotQ407041e-148MADS3_ORYSJ; MADS-box transcription factor 3
TrEMBLA0A368R4S20.0A0A368R4S2_SETIT; Uncharacterized protein
STRINGPavir.Ea00226.1.p1e-176(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-105MIKC_MADS family protein
Publications ? help Back to Top
  1. Kyozuka J,Shimamoto K
    Ectopic expression of OsMADS3, a rice ortholog of AGAMOUS, caused a homeotic transformation of lodicules to stamens in transgenic rice plants.
    Plant Cell Physiol., 2002. 43(1): p. 130-5
    [PMID:11828031]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]