PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G141300.1.p
Common NameLOC101775415, SETIT_000283mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HD-ZIP
Protein Properties Length: 856aa    MW: 92530.1 Da    PI: 5.5708
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G141300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.91.7e-181674357
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                        k  ++t+eq+e+Le+l++++++ps  +r++L + +    +++ +q+kvWFqNrR +ek+
  Seita.5G141300.1.p 16 KYVRYTPEQVEALERLYYECPKPSSLRRQQLVRDCpvlaNVDPKQIKVWFQNRRCREKQ 74
                        6789*****************************************************97 PP
2START1655.3e-521663692200
                         HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EE CS
               START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..ga 90 
                         +aee+++e+++ka+ ++  W +++ +++g++++ +++ s+++ g a+ra+g+v m++a  v+e+l+d + W ++++++e+++v+  g  g+
  Seita.5G141300.1.p 166 IAEETLTEFLSKATGTAVEWIQMPGMKPGPDSIGIIAISHGCAGVAARACGLVGMEPA-KVAEILKDLPLWLRDCRSMEVVNVLPAGnnGT 255
                         789*******************************************************.9***************************9*** PP

                         EEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
               START  91 lqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                         ++l +++l+a+++l+p Rdf+ +Ry+  l +g++v++++S++s+q  p+    ++++R+e+lpSg+li+p+++g+s +++v+h++l+ +++
  Seita.5G141300.1.p 256 IELLYMQLYAPTTLAPaRDFWLLRYTSILDDGSLVVCERSLSSKQGGPSmplVQPFIRGEMLPSGFLIRPSDGGGSIIHIVDHMNLEPWSV 346
                         ************************************************999999************************************* PP

                         HHHHHHHHHHHHHHHHHHHHHHT CS
               START 178 hwllrslvksglaegaktwvatl 200
                         ++++r+l++s+++ ++k+ + +l
  Seita.5G141300.1.p 347 PEVVRPLYESSAMVAQKISMVAL 369
                         *****************988766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.3371175IPR001356Homeobox domain
SMARTSM003891.2E-141379IPR001356Homeobox domain
CDDcd000862.04E-151676No hitNo description
PfamPF000464.1E-161674IPR001356Homeobox domain
SuperFamilySSF466892.44E-161777IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-171874IPR009057Homeodomain-like
CDDcd146864.19E-668107No hitNo description
PROSITE profilePS5084824.383156357IPR002913START domain
SuperFamilySSF559618.1E-35157356No hitNo description
CDDcd088752.75E-72160374No hitNo description
Gene3DG3DSA:3.30.530.202.3E-21163350IPR023393START-like domain
SMARTSM002344.0E-41165375IPR002913START domain
PfamPF018528.9E-50166369IPR002913START domain
PfamPF086702.7E-49708851IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 856 aa     Download sequence    Send to blast
MVTAKEAAAA AMDASKYVRY TPEQVEALER LYYECPKPSS LRRQQLVRDC PVLANVDPKQ  60
IKVWFQNRRC REKQRKESSR LQALNRKLTA MNKLLMEEND RLQKQVSQLV YENGYYRQQT  120
QSAGLATTDT SCESVVTSGG QQNVAAAAAQ PQAQPRDASP AGLMSIAEET LTEFLSKATG  180
TAVEWIQMPG MKPGPDSIGI IAISHGCAGV AARACGLVGM EPAKVAEILK DLPLWLRDCR  240
SMEVVNVLPA GNNGTIELLY MQLYAPTTLA PARDFWLLRY TSILDDGSLV VCERSLSSKQ  300
GGPSMPLVQP FIRGEMLPSG FLIRPSDGGG SIIHIVDHMN LEPWSVPEVV RPLYESSAMV  360
AQKISMVALC YLRQVAHEDN HSVITGWGRQ PAALRALSQK LTRGFNEALN GLADDGWSVI  420
ESDGVDDVCI SVNSSPSKVI NCNATFNNGL PIVSSSVLCA KASMLLQDVS PPALLRFMRE  480
QRSQWADSNL DAFFASAMKP NFCNLPMSRL GGFGGQVILP LAHTFDPEEF LEVIKLGNAS  540
TYQDALMHRD LFLLQMYNGV DENTVGTCSE LIFAPIDASF SDDSPLLPSG FRIIPIDSPL  600
DTSSPNCTLD LASTLEVGTP RSRMPVGGSG NAACAGSKAV MTIAFQFAFE SHLQESVATM  660
ARQYMRSIIA SVQRIALALS SSRLVPQVGV GVGHAPAAAA TASPEAATLS RWICQSYRFH  720
FGAELIKSAD AGGCEAGLKA LWNHASAILC CSLKAMPVFT FANQSGLDML ETTLVALQDI  780
TLEKVFDDQG RKNLCAELPG VMEQGFACIP GGLCVSGLGR PVSYDKALAW KVLDDDSGAH  840
CICFMFVNWS FVSSM*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G141300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012701180.10.0homeobox-leucine zipper protein HOX29 isoform X2
SwissprotA2WLR50.0HOX29_ORYSI; Homeobox-leucine zipper protein HOX29
TrEMBLK3XEG60.0K3XEG6_SETIT; Uncharacterized protein
STRINGSi000283m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein