PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.5G138900.1.p | ||||||||
Common Name | LOC101767629, SETIT_001328mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 469aa MW: 49996.2 Da PI: 7.0695 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.7 | 3.6e-12 | 269 | 311 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 Er+RR+++N++f+ L+++lP+ a K +K +iL +A eY++sL+ Seita.5G138900.1.p 269 SERKRREKLNDSFHALKTVLPPgA------KKDKTSILIRAREYVRSLE 311 6********************966......99999***********996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.948 | 261 | 310 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.75E-15 | 262 | 327 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.00E-12 | 263 | 315 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 7.3E-13 | 265 | 309 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.1E-11 | 267 | 316 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-9 | 269 | 311 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd14686 | 5.82E-4 | 302 | 330 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 3.0E-4 | 310 | 328 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 469 aa Download sequence Send to blast |
MDSGGWIHGY VNNTSGGGNN GFMCGYAAVS SCTPAELQYR EEEEEQFLIS SQIQHHLNQI 60 SMRMNMDDEA SVYVPSSNDG GVSPIGIHSP IIVDGLLDPH HHAGSFPSSS SSSSLSLPSA 120 SLSCSPESSS AHVLAAPAAT TTACSSQYLE VSSQVPLPPP AVPYGDHQYA NLHVPAPAHH 180 DVAAAMAPPE LPPATNAGGA FRRYARHLGP KRPPKPGACG QRMFKTAMAV LSKMHVAARY 240 NQQYYYQQAA AAAEAAPPPS VNQLQHMFSE RKRREKLNDS FHALKTVLPP GAKKDKTSIL 300 IRAREYVRSL ESKVSELEEK NRSLESRLLR GEGSGRKDAG SGGNDCSGDE KVQVEIARAT 360 KEERAAEPCA DDLCTLKIVV RSPCNMTDMM LRTLQCLRNQ IGDGVSLVAM STSDSATGVN 420 TCPRPVLTLQ IKSPPGARWE EQPVKDAVAK VVADALTTTT TTPSAAAQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 269 | 274 | ERKRRE |
2 | 270 | 275 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.5G138900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004971740.1 | 0.0 | putative transcription factor bHLH041 | ||||
TrEMBL | K3XHF7 | 0.0 | K3XHF7_SETIT; Uncharacterized protein | ||||
STRING | Si001328m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2900 | 31 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56960.1 | 7e-23 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.5G138900.1.p |
Entrez Gene | 101767629 |