PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G132700.1.p
Common NameLOC101785397, SETIT_001109mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 509aa    MW: 52028.1 Da    PI: 7.3651
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G132700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.41.6e-29256314259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+aed++++++tYeg+Hnh+
  Seita.5G132700.1.p 256 PDGCQWRKYGQKISKGNPCPRAYYRCTVApHCPVRKQVQRCAEDTTILITTYEGQHNHQ 314
                         69**************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.8E-31240316IPR003657WRKY domain
SuperFamilySSF1182902.88E-26248316IPR003657WRKY domain
PROSITE profilePS5081127.783250316IPR003657WRKY domain
SMARTSM007743.3E-34255315IPR003657WRKY domain
PfamPF031063.0E-25257314IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MEVAVERPAP VKEEKRADAK PEMAAATGSA RSLPIVFESF ATTQSDAGIK QEERTLEAAK  60
AEMGEVREEN ERLKTMLSRI VNQYQSLHMH FLDVVKVHEQ EAAKAKLPAA PAPAPGADGV  120
DEDPDDLVSL SLGTRSNGAR RKGHERSSSS SGTAETTAGE GQLSLGLGIA RGSGVPADDD  180
KASGASAAPG VLNLSSDSSS ANDAAKPARD DAAASPPCAT RKSPSAAGEG VDDEVQQQAK  240
KARVSVRVKC DTPTMPDGCQ WRKYGQKISK GNPCPRAYYR CTVAPHCPVR KQVQRCAEDT  300
TILITTYEGQ HNHQLPPAAT AMASTTSAAA AMLTSGSTTS SSPASLAAHG HHLPLAAAGL  360
LGPTTMVSTA ASCPTITLDL TTPAAPHSLM HSTPYAAGYE SKAVPAACSS GYLAYGAAPP  420
SYYAKGSLAL GHLFGGGLGV SSRPEQLYAA QSYLQRTSSL GGGGHGAVAP AVTDTLAKAI  480
TSDPSFQSAL AAAITSVMGR GGAAAAQK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21242318176WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239248KKARVSVRVK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G132700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586050.0KU058605.1 UNVERIFIED: Panicum miliaceum WRKY19-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968485.10.0probable WRKY transcription factor 72
TrEMBLK3XGT80.0K3XGT8_SETIT; Uncharacterized protein
STRINGSi001109m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120812938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.12e-43WRKY DNA-binding protein 72