PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.5G129700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | WRKY | ||||||||
Protein Properties | Length: 292aa MW: 31318.9 Da PI: 9.9366 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101.9 | 3.8e-32 | 213 | 271 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+ Seita.5G129700.1.p 213 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHS 271 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.4E-33 | 198 | 271 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-28 | 205 | 272 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.356 | 208 | 273 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.8E-37 | 213 | 272 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.2E-25 | 214 | 270 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1901141 | Biological Process | regulation of lignin biosynthetic process | ||||
GO:1904369 | Biological Process | positive regulation of sclerenchyma cell differentiation | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MHFAPTWESK ARERNKVERE AEREMFPSPG RAVMALGHGQ HSSSTAGDAM AAAAAAASST 60 PTITFSFQPS PPPTSSLAHH GVLGYSSLLL DHPTTATTSS SSSHAPSSTI PPPTLHHLHA 120 AHVSPPTRSS PPPPPHPWST CDEGHDQGQG RHRGKGAAAV SEGLAAGGHN GAAAALGVGA 180 VRMKKAGGGG GKARRKVREP RFCFKTMSDV DVLDDGYKWR KYGQKVVKNT QHPRSYYRCT 240 QDNCRVKKRV ERLAEDPRMV ITTYEGRHVH SPSRDEDDDA ARANAEMSFI W* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-25 | 204 | 270 | 8 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 2e-25 | 204 | 270 | 8 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.5G129700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU963646 | 1e-159 | EU963646.1 Zea mays clone 265112 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004968441.1 | 0.0 | probable WRKY transcription factor 12 | ||||
TrEMBL | A0A368R4J1 | 0.0 | A0A368R4J1_SETIT; Uncharacterized protein | ||||
STRING | Si003805m | 1e-148 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1138 | 38 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39410.1 | 4e-47 | WRKY DNA-binding protein 13 |
Link Out ? help Back to Top | |
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Phytozome | Seita.5G129700.1.p |