PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.5G113600.1.p

Common Name

LOC101774488, SETIT_002655mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bHLH

Protein Properties

Length: 254aa MW: 27543.6 Da PI: 9.2548

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.5G113600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31	4.7e-10	66	110	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+e+ErrRR+riN + +Lr+++P + ++Ka+ L ++v+ +k L Seita.5G113600.1.p 66 HSEAERRRRERINAHLTTLRRMVPDT-----RQMDKATLLARVVDQVKLL 110 9**********************8.....689*9999999977765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.14E-13	52	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.583	61	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.0E-8	66	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.8E-13	66	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-10	67	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	7.16E-7	155	221	No hit	No description
Gene3D	G3DSA:3.30.70.260	7.4E-4	155	220	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MAACQPMQEG KELQGLQPYD GCDPSVFVGP LLLPRQASSA PPAPPALSSS SGSGRSATEA 60 RALKIHSEAE RRRRERINAH LTTLRRMVPD TRQMDKATLL ARVVDQVKLL KREASEATQS 120 MALPPETNEV SIELHAGDSG VVVAGTDKMI YMKASISCDD RPDLIAGLIQ AFHGLRLRTV 180 RADLTSLGGR VQHVFVLCRE EGWGSEGASL RSLKEALRQA LAKVASPEMA YGSSPFQSKR 240 QRILESHYSI MSI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	69	74	ERRRRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.5G113600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004968277.1	0.0	transcription factor bHLH30
Refseq	XP_004968280.1	0.0	transcription factor bHLH30
TrEMBL	K3XL82	0.0	K3XL82_SETIT; Uncharacterized protein
STRING	Si002655m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3347	36	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40200.1	1e-29	bHLH family protein

Link Out ? help Back to Top
Phytozome	Seita.5G113600.1.p
Entrez Gene	101774488