PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.5G112600.1.p | ||||||||
Common Name | LOC101771637, SETIT_000223mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NF-X1 | ||||||||
Protein Properties | Length: 927aa MW: 101392 Da PI: 8.4734 | ||||||||
Description | NF-X1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-NF-X1 | 18.3 | 5.2e-06 | 282 | 299 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG H+C CH GpCppC Seita.5G112600.1.p 282 CGLHRCPVNCHDGPCPPC 299 ****************** PP | |||||||
2 | zf-NF-X1 | 19.6 | 2e-06 | 389 | 408 | 1 | 19 |
zf-NF-X1 1 CGkHkCqklCHeGpCpp.Cp 19 CG+H+C + CH+GpC++ C+ Seita.5G112600.1.p 389 CGRHRCPERCHRGPCDEtCR 408 *******************8 PP | |||||||
3 | zf-NF-X1 | 17.4 | 9.9e-06 | 442 | 461 | 1 | 20 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG+H C++ C+ G+CppC++ Seita.5G112600.1.p 442 CGRHACKRRCCAGDCPPCSE 461 ******************85 PP | |||||||
4 | zf-NF-X1 | 20.7 | 8.9e-07 | 469 | 488 | 1 | 20 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG+HkC ++CH+G C pCp+ Seita.5G112600.1.p 469 CGNHKCLSPCHRGACSPCPL 488 ******************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50089 | 8.55 | 127 | 180 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS01359 | 0 | 127 | 179 | IPR019786 | Zinc finger, PHD-type, conserved site |
SMART | SM00438 | 0.008 | 229 | 247 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.0097 | 230 | 246 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 5.88E-9 | 272 | 320 | No hit | No description |
Pfam | PF01422 | 1.2E-4 | 282 | 299 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.0013 | 282 | 301 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 7.08E-7 | 325 | 365 | No hit | No description |
Pfam | PF01422 | 2.9 | 329 | 353 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.027 | 335 | 354 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 3.72E-9 | 379 | 428 | No hit | No description |
Pfam | PF01422 | 8.5E-4 | 389 | 408 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.0029 | 389 | 409 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 3.87E-9 | 432 | 480 | No hit | No description |
Pfam | PF01422 | 0.0015 | 442 | 460 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.0069 | 442 | 461 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 2.00E-10 | 459 | 507 | No hit | No description |
Pfam | PF01422 | 6.3E-5 | 469 | 487 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.0083 | 469 | 488 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 25 | 532 | 547 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 37 | 536 | 546 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.54 | 637 | 647 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 110 | 637 | 676 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.27 | 689 | 706 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.05 | 689 | 707 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 69 | 752 | 766 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 1 | 752 | 773 | IPR000967 | Zinc finger, NF-X1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000037 | Biological Process | regulation of stomatal complex patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 927 aa Download sequence Send to blast |
MPSSYAAAAA GSSSRKTNRV PTAAAAGSSS RKPNLTSTAA AATARPRPPA PSPSPAPAPP 60 AANPTAVSDS DPSSYSSSSG DEADLTASDS ATASVVSAYL SVAGEGADLS KVGIFLSSAA 120 RRRSPPCLIC FDPIRPSDPV WSCSSSCFAI LHLPCIQSWA HQSASGAAVP CPTWGCPKCR 180 FAYPKSQTPT SYLCFCSKTA DPAPDPWILP HSCGDVCGRR LNANLDSGCE HTCLLLCHPG 240 PCPPCPAVVP NAPCFCGAHW EPRRCAHQRY SCAGKCNKRL SCGLHRCPVN CHDGPCPPCA 300 VRGKHKCECG ETMEEKLCSE RVFQCKRECG GMLDCRKHKC ERGCHGGKCG ECPLRGRRTC 360 PCGKKDYPKL ECDAEAATCG STCEKVLGCG RHRCPERCHR GPCDETCRLV ITKSCRCGGL 420 KKEVPCYQEL TCERKCQRLR NCGRHACKRR CCAGDCPPCS ETCDRKLRCG NHKCLSPCHR 480 GACSPCPLMK TISCACGKTC FEVPCGTEKN QKPQKCSKKC NIPRLCRHKL ECRPHKCHYG 540 ACPPCKLTCG EELSCGHICK ERCHGPISPP NPEFTLKPTK KKMEKHIECT PGTLCPPCKE 600 VVVVPCFGQH LGQERAMPCS KWRPFPCQNL CGNPLLCGNH YCTKSCHVLE VPLNQPEGDP 660 LPSVSKESTL AEPCEQCNLP CQRVREPSCS HRCPLRCHPS DCPPCKVLVK KPCHCGAMVH 720 AFECVYFNNL KAKEQVKVRS CGGPCHRKLP NCSHLCSEVC HPGTCPSVDQ CMKKVNVRCA 780 CNTLKQEWIC QDVLKEYRNS GRDPKEVPKS QFGAGLLACG EDCKKKVKVQ DSELHLRKTQ 840 ENKIPAMEVA NVPKRRKRRD RGQEVEVSKF QEVKTYVLRV LLIIFLSMII AAGLYLLWKG 900 IFRLSDWMNE MEEQRTSRRH PRGAML* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 852 | 858 | PKRRKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.5G112600.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT066663 | 0.0 | BT066663.1 Zea mays full-length cDNA clone ZM_BFb0042A15 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004968270.1 | 0.0 | NF-X1-type zinc finger protein NFXL2 | ||||
Swissprot | Q9FFK8 | 0.0 | NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2 | ||||
TrEMBL | K3XEA6 | 0.0 | K3XEA6_SETIT; Uncharacterized protein | ||||
STRING | Si000223m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10773 | 35 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05660.1 | 0.0 | sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | Seita.5G112600.1.p |
Entrez Gene | 101771637 |