PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.5G110700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 333aa MW: 36140.9 Da PI: 8.6979 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.6 | 3.4e-14 | 51 | 95 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +W +eE+ +++da ++G + Wk+I +++ ++t+ q++s+ qky Seita.5G110700.1.p 51 REPWRAEEHGRFLDALLMFGRD-WKKIEEHVR-TKTAVQIRSHAQKY 95 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-7 | 45 | 96 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.42E-15 | 45 | 101 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.141 | 46 | 100 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 2.2E-15 | 49 | 98 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.6E-8 | 50 | 98 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-11 | 51 | 95 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.61E-7 | 53 | 96 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MARVSIYTVH QPGFLGGSHW HCIRFVEGME RGSDEVPGKK ARKPYTTTKP REPWRAEEHG 60 RFLDALLMFG RDWKKIEEHV RTKTAVQIRS HAQKYFLKVQ KLGLAAGLPP MHPRRRFSME 120 QQSSAPAAGS SAAAVPLLHE ELQRAPVAVP PGPSGAAVAH GCISWNRNSP GVLPVASSSE 180 MQHGLDWAGG SASGARAWLN SDAQSQSSPL PGGSQFIGAP SFSSTSMEWA GSSTSGGSAT 240 GSVQEELIEL PLSPDDLHFA QVYRFVGDVF DPNAPIPVEA HLQKLKDMDD ITVKTILLVL 300 RNLEDNLSAP QFEPIRRLLS TYDPRRGLSG QL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.5G110700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT069330 | 6e-57 | BT069330.2 Zea mays full-length cDNA clone ZM_BFc0100G09 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004971681.1 | 0.0 | protein REVEILLE 8 | ||||
TrEMBL | A0A368R3H7 | 0.0 | A0A368R3H7_SETIT; Uncharacterized protein | ||||
STRING | Si002704m | 1e-143 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3642 | 31 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09600.1 | 3e-29 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.5G110700.1.p |