PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.5G088000.1.p

Common Name

LOC101759745, SETIT_002412mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

LBD

Protein Properties

Length: 298aa MW: 31798 Da PI: 7.9805

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.5G088000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	93.6	2.2e-29	4	106	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C++C+vlr++C+++C+++ ++ p++q +++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +PvyG+vg++++++++ Seita.5G088000.1.p 4 SCNGCRVLRKGCSDNCAIRLCLqwirsPDAQGNATVFLAKFYGRAGLINLIAAGPEHVRPAIFRSLLYEACGRMLNPVYGSVGLLWSGNWK 94 6***********************99*********************************************************** PP DUF260 87 leqlkaelallk 98 l+q+++e +l++ Seita.5G088000.1.p 95 LCQSAVESVLRG 106 ***9988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038155	1.8E-87	1	294	IPR017414	LOB domain-containing protein 10/36/41
PROSITE profile	PS50891	15.85	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-22	4	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSDNCA IRLCLQWIRS PDAQGNATVF LAKFYGRAGL INLIAAGPEH 60 VRPAIFRSLL YEACGRMLNP VYGSVGLLWS GNWKLCQSAV ESVLRGMPIA PPPPAATAVP 120 PLRTCDIRHV ARREADDHGA VAAAAGLHRL ANSSRGQFKR SAGAHRSAGS GSGIELVFSQ 180 PSAAASMLVD VRMAQPLNWA PRRQPSHEYS GSHDAVPETD SNTSVDTVDV SHVSQSEPEP 240 RREIDDDGRA DGLDLTLGLP TTTVHKTEPS DVDDGLQPCH RGELAKLGLA IADSRAR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.5G088000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP100502	1e-141	FP100502.1 Phyllostachys edulis cDNA clone: bphyem111j02, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004968068.1	0.0	LOB domain-containing protein 42
Swissprot	Q9M886	5e-69	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	K3XKI9	0.0	K3XKI9_SETIT; Uncharacterized protein
STRING	Si002412m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1235	37	127

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	9e-64	LOB domain-containing protein 41

Link Out ? help Back to Top
Phytozome	Seita.5G088000.1.p
Entrez Gene	101759745