PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G087200.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB
Protein Properties Length: 366aa    MW: 39140.7 Da    PI: 6.5646
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G087200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.4e-163179148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48
                        rg+WT eEd ll ++++ +G g+W++ ar+    +Rt+k+c++rw++yl
  Seita.5G087200.1.p 31 RGPWTLEEDNLLMNYIACHGEGRWNLLARCSDqSNRTGKSCRLRWLNYL 79
                        89*********************************************97 PP
2Myb_DNA-binding53.55.4e-1785128146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ T+eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Seita.5G087200.1.p  85 RGNLTPEEQLLILELHSKWGNR-WSRIAQHLP-GRTDNEIKNYWRT 128
                         7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.9652679IPR017930Myb domain
SuperFamilySSF466892.62E-3028126IPR009057Homeodomain-like
SMARTSM007173.8E-133081IPR001005SANT/Myb domain
PfamPF002493.8E-143179IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-233286IPR009057Homeodomain-like
CDDcd001679.66E-113379No hitNo description
PROSITE profilePS5129426.28180134IPR017930Myb domain
SMARTSM007171.5E-1584132IPR001005SANT/Myb domain
PfamPF002497.2E-1685128IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-2487133IPR009057Homeodomain-like
CDDcd001674.38E-1389128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MQATIMSQRK GAAMAAVATS KHEEEMMELR RGPWTLEEDN LLMNYIACHG EGRWNLLARC  60
SDQSNRTGKS CRLRWLNYLK PDIKRGNLTP EEQLLILELH SKWGNRWSRI AQHLPGRTDN  120
EIKNYWRTRV QKQARQLRVD ANSAVFRDAV RCYWMPRLLE KMAAATATSA HQVDPALLHP  180
AAHIAGGMAS ADASSPVHVG GHQDAATNAP GSGGYSHHGP QRYPVDPSPS TSTSGGSGST  240
SAAALPPVPC FSELSWVDQY GPYADLDGGA FDAAALGGLG LDGLDLGPAD SDFYSDSTLL  300
DYLNSTCCTG GGAMMTTMMS GVNAAHSSCG GMGGQDGDYG SSWRADDICQ AAARKLGDHQ  360
WGGGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-27281331104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G087200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794271e-180HF679427.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB21 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814736.11e-173transcription factor MYB2-like
TrEMBLA0A368R4J30.0A0A368R4J3_SETIT; Uncharacterized protein
STRINGSi003873m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.11e-76myb domain protein 62