PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.5G079000.1.p | ||||||||
Common Name | LOC101767335, SETIT_000344mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 806aa MW: 86298.3 Da PI: 5.0949 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 69.3 | 4.8e-22 | 99 | 154 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r eL+++lgL+ rqVk+WFqNrR+++k Seita.5G079000.1.p 99 KKRYHRHTPQQIQELEALFKECPHPDEKQRGELSRRLGLDPRQVKFWFQNRRTQMK 154 678899***********************************************999 PP | |||||||
2 | START | 191.3 | 4.7e-60 | 315 | 547 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS......SCEEEEEEEECCS.CHHHHHHHHHCCCGGCT-TT-S.. CS START 1 elaeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv.....dsgealrasgvvd.mvlallveellddkeqWdetla.. 77 ela +a++elvk+a+ +ep+W s e++n +e+ q+f + + + +ea+r+sg+v+ ++++ lve+l+d + +W+ ++ Seita.5G079000.1.p 315 ELAISAMDELVKLAQIDEPLWLPSLngspnkEMLNFEEYAQSFLPCIGvkpvgYVSEASRESGLVIiDDSVALVETLMDER-RWSDMFScm 404 57889********************999999999*********998889**************997245679*********.********* PP ..EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE..-TTS--....-TTSEE-EESSEEEEE CS START 78 ..kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvd..seqkppe...sssvvRaellpSgili 154 ka++le ++sg gal lm+aelq+lsplvp R+++f+R+++ql +g w++vdvS+d ++++++ +++ vR+++lpSg+++ Seita.5G079000.1.p 405 iaKATILEEVTSGiagsrnGALLLMKAELQVLSPLVPiREVTFLRFCKQLAEGAWAVVDVSIDglVRDQNSAtisNAGNVRCRRLPSGCVM 495 *9************************************************************95433444446899*************** PP EEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 155 epksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ++++ng++kvtwveh++++++++h+l+r+l++sgla+ga++w+a lqrqce+ Seita.5G079000.1.p 496 QDTPNGYCKVTWVEHTEYDEASVHQLYRPLLRSGLAFGARRWLAMLQRQCEC 547 **************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.52E-22 | 80 | 156 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.5E-24 | 84 | 156 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.285 | 96 | 156 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.8E-21 | 97 | 160 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.81E-20 | 98 | 156 | No hit | No description |
Pfam | PF00046 | 1.5E-19 | 99 | 154 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 131 | 154 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 47.244 | 306 | 550 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.1E-31 | 308 | 547 | No hit | No description |
CDD | cd08875 | 1.49E-115 | 310 | 546 | No hit | No description |
SMART | SM00234 | 3.8E-49 | 315 | 547 | IPR002913 | START domain |
Pfam | PF01852 | 2.1E-52 | 316 | 547 | IPR002913 | START domain |
SuperFamily | SSF55961 | 8.79E-22 | 567 | 775 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009827 | Biological Process | plant-type cell wall modification | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0043481 | Biological Process | anthocyanin accumulation in tissues in response to UV light | ||||
GO:0048765 | Biological Process | root hair cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 806 aa Download sequence Send to blast |
MSFGSLFDGG AGGGGCGGMQ FPFSGGFSSS PALSLGLDNA GGGGGMGGGR ALPGGAGDGS 60 ARDADAENDS RSGSDHLDAM SGGGEDEDDA EPGNPRKRKK RYHRHTPQQI QELEALFKEC 120 PHPDEKQRGE LSRRLGLDPR QVKFWFQNRR TQMKTQLERH ENALLKQEND KLRAENMTIR 180 EAMRTPMCGS CGSPAMLGEV SLEEQHLCIE NARLKDELNR VYALATKFLG KPMAMLSGPM 240 LQPHLSSLPM PSSSLELAVG GFRGLGSIPS ATMPGSMSEF AGGVSSPLGT VITPARATGS 300 APPSMVGIDR SMLLELAISA MDELVKLAQI DEPLWLPSLN GSPNKEMLNF EEYAQSFLPC 360 IGVKPVGYVS EASRESGLVI IDDSVALVET LMDERRWSDM FSCMIAKATI LEEVTSGIAG 420 SRNGALLLMK AELQVLSPLV PIREVTFLRF CKQLAEGAWA VVDVSIDGLV RDQNSATISN 480 AGNVRCRRLP SGCVMQDTPN GYCKVTWVEH TEYDEASVHQ LYRPLLRSGL AFGARRWLAM 540 LQRQCECLAI LMSPDTVSAN DSSVITQEGK RSMLKLARRM TENFCAGVSA SSAREWSKLD 600 GATGSIGEDV RVMARKSVDE PGEPPGVVLS AATSVWVPVA PEKLFNFLRD EQLRAEWDIL 660 SNGGPMQEMA NIAKGQEHGN SVSLLRASAM SANQSSMLIL QETCTDASGS MVVYAPVDIP 720 AMQLVMNGGD STYVALLPSG FAILPDGPST GAEHKTGGSL LTVAFQILVN SQPTAKLTVE 780 SVETVNNLIS CTIKKIKTAL QWDSA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 94 | 100 | PRKRKKR |
2 | 95 | 99 | RKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00421 | DAP | Transfer from AT4G00730 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.5G079000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT063249 | 0.0 | BT063249.1 Zea mays full-length cDNA clone ZM_BFc0042P14 mRNA, complete cds. | |||
GenBank | BT064453 | 0.0 | BT064453.1 Zea mays full-length cDNA clone ZM_BFc0170E20 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004968002.1 | 0.0 | homeobox-leucine zipper protein ROC5 isoform X2 | ||||
Swissprot | Q6EPF0 | 0.0 | ROC5_ORYSJ; Homeobox-leucine zipper protein ROC5 | ||||
TrEMBL | K3XEN0 | 0.0 | K3XEN0_SETIT; Uncharacterized protein | ||||
STRING | Si000344m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1203 | 37 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61150.1 | 0.0 | homeodomain GLABROUS 1 |
Link Out ? help Back to Top | |
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Phytozome | Seita.5G079000.1.p |
Entrez Gene | 101767335 |
Publications ? help Back to Top | |||
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