PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G070900.1.p
Common NameSETIT_002003mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 358aa    MW: 39258.7 Da    PI: 7.2508
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G070900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.78e-52321601129
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrF P+dee+v++yLk+kve++++++  +i evd+ ++eP +Lp k+k++ekewyfF ++d+ky+tg r nrat+ gyWkatgkdke
  Seita.5G070900.1.p  32 LPPGFRFYPSDEEIVTFYLKPKVEQRSFTC-IAIGEVDLKRTEPCELPGKAKTGEKEWYFFYEKDRKYRTGLRMNRATEGGYWKATGKDKE 121
                         79**************************99.88***************99999************************************** PP

                 NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                         ++++ +g l+g+kktLvfy+grap+g+kt+Wvmheyrle
  Seita.5G070900.1.p 122 IYRTmTGVLIGMKKTLVFYTGRAPRGQKTTWVMHEYRLE 160
                         **9988999****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-5929197IPR003441NAC domain
PROSITE profilePS5100556.68632197IPR003441NAC domain
PfamPF023651.4E-2733159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MADQGVFAHE QGTTGDQHQQ PHGIGVGDDL ELPPGFRFYP SDEEIVTFYL KPKVEQRSFT  60
CIAIGEVDLK RTEPCELPGK AKTGEKEWYF FYEKDRKYRT GLRMNRATEG GYWKATGKDK  120
EIYRTMTGVL IGMKKTLVFY TGRAPRGQKT TWVMHEYRLE GNNKSPHPSS SSTSTTMKSS  180
SASEATDEWV VCRVFRKATG IKKAPTPPPY NHAIVDSGID QRSIPMPPPL QLPMLPNFTM  240
DPVGSYYSIA GVSSSSLSPV IPPITAGTGN DMLQMNSALF GNMMAVPPPM PFSHQLGIGT  300
ASASTFMAAP QSEASSILSQ KDVGMSLHQT NAMDISSMVS ATLESMGTMD MDGFWKY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-483020315171NO APICAL MERISTEM PROTEIN
1ut4_B3e-483020315171NO APICAL MERISTEM PROTEIN
1ut7_A3e-483020315171NO APICAL MERISTEM PROTEIN
1ut7_B3e-483020315171NO APICAL MERISTEM PROTEIN
3swm_A4e-483020318174NAC domain-containing protein 19
3swm_B4e-483020318174NAC domain-containing protein 19
3swm_C4e-483020318174NAC domain-containing protein 19
3swm_D4e-483020318174NAC domain-containing protein 19
3swp_A4e-483020318174NAC domain-containing protein 19
3swp_B4e-483020318174NAC domain-containing protein 19
3swp_C4e-483020318174NAC domain-containing protein 19
3swp_D4e-483020318174NAC domain-containing protein 19
4dul_A3e-483020315171NAC domain-containing protein 19
4dul_B3e-483020315171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G070900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682347.10.0NAC domain-containing protein 48
SwissprotQ9FLJ21e-68NC100_ARATH; NAC domain-containing protein 100
TrEMBLK3XJD00.0K3XJD0_SETIT; Uncharacterized protein
STRINGSi002003m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145237121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.14e-70NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]