PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G069700.2.p
Common NameLOC101772563, SETIT_001592mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 421aa    MW: 44539 Da    PI: 7.3229
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G069700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.37.7e-053113491255
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  Seita.5G069700.2.p 311 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 349
                         7788899*********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.163299348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.35E-5309353No hitNo description
SuperFamilySSF474595.89E-11309360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-8313356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MMASSSSSSN LSDHLVQDDL PWPSSSSLPF APTPHSAVIG GSHQWSQQPP MLNCGDHHHS  60
DELEVLLSAQ GHNHSHHAAS PLAPHQLSSL LMMQDLGFQW SNCSFADAVS VPTNGQQDGH  120
SKIKEEQPFN PRSSSCAGAA MAYHDIVLDG GGGGGGLPAM AAAGLDGAVL PSVNISRPPQ  180
QLMKAWPAAP PPLPGDAFEI LASSRLCKTL LLSQASSVLL HNGMPLLRSE HVPHGPPPAH  240
PQGPSGDNYR QMVGAALVNE AAGGNRHWSA EHDAACQKAA RPVPSSQAPS SLKKPRVESR  300
ASTIVPSFKV RKEKLGDRIA ALQQLVSPFG KTDTASVLME AIGYIKFLQD QVETLSGPYL  360
KSSRNKKPRT TQRGPSDANG GEEETRLDLR SRGLCLVPLS CTSYVTNENG AWAPPNFRGN  420
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G069700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1194937e-54AK119493.1 Oryza sativa Japonica Group cDNA clone:001-134-D09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967935.10.0transcription factor bHLH123 isoform X2
TrEMBLK3XI700.0K3XI70_SETIT; Uncharacterized protein
STRINGSi001592m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.12e-47bHLH family protein