PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G052700.1.p
Common NameSETIT_000689mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Dof
Protein Properties Length: 585aa    MW: 63645.8 Da    PI: 4.7638
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G052700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1244.9e-39206264260
              zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 
                         ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrk+k+
  Seita.5G052700.1.p 206 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKSKN 264
                         7899****************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-31195263IPR003851Zinc finger, Dof-type
PfamPF027014.6E-32208264IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.891210264IPR003851Zinc finger, Dof-type
PROSITE patternPS013610212248IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MSDQKDPGIK LFGRVIPLAP EPAPEATETE DPLGHDQPPE ELQPRAPEEE AAAVADEGQH  60
NEKEDTEDSE MEVDTPQEKG SEMKVDTPLE KGNEMKVDTP LEKGNEMKID TPQEEKGNEM  120
KFDASKKEQD GEMKVDAQQE KKDEQMKVDA PPRAENIQPG TSPRSDHKKE DQGQMNSTED  180
KAASDPKGES EKANDESGQD KTLKKPDKIL PCPRCNSMDT KFCYYNNYNV NQPRHFCKNC  240
QRYWTAGGTM RNVPVGAGRR KSKNAPLHYR QLLMAPDCML GSRVDISKSV LPEALVSPPS  300
APVQPTSRNE TVLKFGPEVP LCESLVSALN IDEQNAKNPG SAPRGENRED NSCASAVTSY  360
NGLPENTVHV DKNGAPVYCN GVAPVPQYYL GTPFMYPWSV GWNNLPVMVP GKSMPEAASA  420
SESCSTSSAP WMTSPMMPAS TSPAFPYPLV PPALWGCLSG WPATTWNIPW VRTNGCVSPS  480
SSSNSSCSGN GSPTLGKHSR DSNPLKDEKQ EKSLWVPKTL RIDDPDEAAK SSIWATLGIK  540
PGDPGTFKPF QSKVESKGQK ADAAQVLQAN PAALSRSQSF QESS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00046PBMTransfer from AT5G39660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G052700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2995600.0KF299560.1 Miscanthus sacchariflorus clone Msac_GC_7 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967771.10.0cyclic dof factor 2
TrEMBLK3XFM00.0K3XFM0_SETIT; Uncharacterized protein
STRINGSi000689m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143438116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.28e-68cycling DOF factor 2